Variant report

Variant	rs10148642
Chromosome Location	chr14:84779494-84779495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10129851	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10132898	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10137608	0.96[ASN][1000 genomes]
rs10145673	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12436486	0.92[EUR][1000 genomes]
rs17119896	0.94[ASN][1000 genomes]
rs17707121	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3924602	0.92[EUR][1000 genomes]
rs4075208	0.94[ASN][1000 genomes]
rs4277275	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4277283	0.96[ASN][1000 genomes]
rs4372623	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55986944	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7148565	0.96[ASN][1000 genomes]
rs7154367	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7157365	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7157373	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832845	chr14:84726378-84900199	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84777800-84780200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:84778800-84779800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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