Variant report

Variant	rs3924602
Chromosome Location	chr14:84765911-84765912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10129851	0.92[EUR][1000 genomes]
rs10132898	0.93[EUR][1000 genomes]
rs10145673	0.93[EUR][1000 genomes]
rs10148642	0.92[EUR][1000 genomes]
rs12431785	0.84[AFR][1000 genomes]
rs12436486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12891687	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17707121	0.91[EUR][1000 genomes]
rs4277275	0.93[EUR][1000 genomes]
rs4372623	0.93[EUR][1000 genomes]
rs55986944	0.93[EUR][1000 genomes]
rs7154367	0.93[EUR][1000 genomes]
rs7157365	0.92[EUR][1000 genomes]
rs7157373	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902161	chr14:84699866-84769903	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv832845	chr14:84726378-84900199	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84764600-84766000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:84765000-84766200	Enhancers	Fetal Lung	lung
3	chr14:84765200-84766000	Enhancers	Esophagus	oesophagus
4	chr14:84765200-84766000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr14:84765200-84766000	Enhancers	Fetal Stomach	stomach
6	chr14:84765200-84766000	Enhancers	Stomach Mucosa	stomach
7	chr14:84765400-84766000	Enhancers	Adipose Nuclei	Adipose
8	chr14:84765400-84769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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