Variant report

Variant	rs10149281
Chromosome Location	chr14:69396615-69396616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69395351..69398250-chr14:69405084..69406992,2	MCF-7	breast:
2	chr14:69396044..69397860-chr14:69399942..69402928,2	MCF-7	breast:
3	chr14:69395161..69397002-chr14:69397028..69399806,2	MCF-7	breast:
4	chr14:69393526..69396798-chr14:69399350..69401820,3	K562	blood:
5	chr14:69390453..69396616-chr14:69408232..69413432,8	MCF-7	breast:
6	chr14:69394801..69397631-chr14:69439389..69441404,2	MCF-7	breast:
7	chr14:69392307..69395175-chr14:69395494..69398200,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10130940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135072	0.82[AFR][1000 genomes]
rs10136833	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136928	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147838	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10151706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220357	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220358	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220562	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220679	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101054	0.85[JPT][hapmap]
rs12434957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194718	0.85[JPT][hapmap]
rs2093010	0.85[JPT][hapmap]
rs2273419	0.85[JPT][hapmap]
rs28488011	0.80[AFR][1000 genomes]
rs73288945	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059828	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743127	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv564964	chr14:69392264-69423164	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv456333	chr14:69392445-69415962	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv564965	chr14:69392445-69415962	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
2	chr14:69372400-69404400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr14:69378800-69402400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:69385600-69402800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:69387000-69402600	Weak transcription	K562	blood
6	chr14:69387400-69420400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:69387800-69405600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:69389400-69397400	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr14:69389600-69404400	Weak transcription	Psoas Muscle	Psoas
10	chr14:69390000-69397800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:69390000-69402200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:69390000-69404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:69390200-69402400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:69391800-69397800	Strong transcription	HSMM	muscle
15	chr14:69391800-69403600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:69392400-69397800	Weak transcription	NHDF-Ad	bronchial
17	chr14:69392400-69404400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:69392400-69404400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:69392600-69397600	Weak transcription	HSMMtube	muscle
20	chr14:69392600-69400600	Weak transcription	HUVEC	blood vessel
21	chr14:69392800-69406200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:69393200-69400600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr14:69393400-69397600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:69393400-69398000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:69393400-69404200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr14:69393400-69404400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr14:69393600-69406400	Weak transcription	Hela-S3	cervix
28	chr14:69393800-69399400	Strong transcription	NHEK	skin
29	chr14:69393800-69401000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr14:69393800-69401200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr14:69393800-69404400	Weak transcription	Thymus	Thymus
32	chr14:69393800-69405000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:69393800-69405800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:69394000-69396800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:69394000-69396800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr14:69394000-69396800	Enhancers	Gastric	stomach
37	chr14:69394000-69404400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:69394200-69396800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr14:69394200-69396800	Enhancers	Fetal Muscle Leg	muscle
40	chr14:69394200-69396800	Enhancers	Pancreas	Pancrea
41	chr14:69394200-69396800	Enhancers	NH-A	brain
42	chr14:69394200-69397800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:69394200-69398800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr14:69394200-69422200	Weak transcription	Dnd41	blood
45	chr14:69394400-69399400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:69394600-69397400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr14:69394600-69399600	Genic enhancers	Fetal Stomach	stomach
48	chr14:69394800-69396800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:69394800-69397200	Enhancers	HepG2	liver
50	chr14:69394800-69399800	Enhancers	Fetal Heart	heart

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