Variant report

Variant	rs12101054
Chromosome Location	chr14:69425258-69425259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69417733..69419783-chr14:69424875..69426386,2	MCF-7	breast:
2	chr14:69423649..69425518-chr14:69426696..69428548,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10130940	0.85[JPT][hapmap]
rs10136833	0.85[JPT][hapmap]
rs10139706	0.85[JPT][hapmap]
rs10142141	0.85[JPT][hapmap]
rs10147437	0.85[JPT][hapmap]
rs10147838	0.85[JPT][hapmap]
rs10149281	0.85[JPT][hapmap]
rs10151706	0.85[JPT][hapmap]
rs12434957	0.85[JPT][hapmap]
rs1710990	1.00[CHB][hapmap]
rs194718	1.00[JPT][hapmap]
rs2093010	1.00[JPT][hapmap]
rs2273419	1.00[JPT][hapmap]
rs743127	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69402000-69426200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr14:69402400-69427000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:69409800-69434400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr14:69411200-69442600	Weak transcription	Fetal Brain Female	brain
5	chr14:69414800-69428800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:69417400-69429200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:69420200-69428600	Weak transcription	Esophagus	oesophagus
8	chr14:69420200-69430800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:69420200-69437200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:69420200-69441200	Genic enhancers	NHEK	skin
11	chr14:69420600-69441600	Genic enhancers	NH-A	brain
12	chr14:69420800-69427000	Genic enhancers	Muscle Satellite Cultured Cells	--
13	chr14:69421000-69426000	Enhancers	Ovary	ovary
14	chr14:69421000-69432200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr14:69421200-69426400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr14:69421200-69426600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:69421200-69442200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:69421400-69425400	Enhancers	Right Ventricle	heart
19	chr14:69421400-69426000	Enhancers	Left Ventricle	heart
20	chr14:69421600-69426000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:69421600-69426200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:69421600-69426400	Enhancers	Adipose Nuclei	Adipose
23	chr14:69421600-69426400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr14:69421600-69426600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr14:69421600-69427000	Enhancers	Liver	Liver
26	chr14:69421800-69426000	Enhancers	Fetal Thymus	thymus
27	chr14:69421800-69426200	Enhancers	Duodenum Mucosa	Duodenum
28	chr14:69421800-69426600	Genic enhancers	HSMMtube	muscle
29	chr14:69421800-69427200	Genic enhancers	HSMM	muscle
30	chr14:69422000-69425400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:69422000-69425400	Genic enhancers	HMEC	breast
32	chr14:69422000-69426000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:69422000-69426600	Genic enhancers	Primary T cells from cord blood	blood
34	chr14:69422200-69426200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr14:69422400-69425800	Genic enhancers	A549	lung
36	chr14:69422400-69429000	Weak transcription	Thymus	Thymus
37	chr14:69422400-69433600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:69422600-69425600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
39	chr14:69422600-69428400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr14:69422800-69426200	Enhancers	Stomach Mucosa	stomach
41	chr14:69422800-69428400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr14:69422800-69428600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:69422800-69430800	Weak transcription	Fetal Kidney	kidney
44	chr14:69423000-69435000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:69423200-69428000	Genic enhancers	HepG2	liver
46	chr14:69423400-69427400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr14:69423400-69428200	Weak transcription	Brain Angular Gyrus	brain
48	chr14:69423600-69426000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr14:69423600-69426200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr14:69423600-69432400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links