Variant report

Variant	rs743127
Chromosome Location	chr14:69376479-69376480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69375398..69378036-chr14:69403705..69406227,2	MCF-7	breast:
2	chr14:69374685..69378392-chr14:69571910..69575766,3	MCF-7	breast:

rs_ID	r²[population]
rs10130940	0.85[JPT][hapmap]
rs10136833	0.85[JPT][hapmap]
rs10139706	0.85[JPT][hapmap]
rs10142141	0.85[JPT][hapmap]
rs10147437	0.85[JPT][hapmap]
rs10147838	0.85[JPT][hapmap]
rs10149281	0.85[JPT][hapmap]
rs10151706	0.85[JPT][hapmap]
rs12101054	1.00[JPT][hapmap]
rs12434957	0.85[JPT][hapmap]
rs194718	1.00[JPT][hapmap]
rs2093010	1.00[JPT][hapmap]
rs2273419	1.00[JPT][hapmap]
rs4899268	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8017601	0.94[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs743127	SMOC1	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69336400-69378200	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
3	chr14:69337800-69379200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69337800-69380600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:69338000-69378800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:69338200-69378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:69338400-69377800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:69339200-69394600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:69341800-69378400	Strong transcription	Fetal Intestine Small	intestine
10	chr14:69341800-69380400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:69342000-69378200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:69342200-69378200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:69345800-69394800	Weak transcription	Small Intestine	intestine
14	chr14:69346800-69379800	Strong transcription	Fetal Intestine Large	intestine
15	chr14:69348200-69389200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:69354000-69393200	Strong transcription	NHEK	skin
17	chr14:69354400-69378600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:69354600-69379000	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr14:69354600-69379000	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:69354600-69393000	Strong transcription	Dnd41	blood
21	chr14:69355800-69378200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr14:69358200-69379200	Strong transcription	HepG2	liver
23	chr14:69360400-69378600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:69360600-69388800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:69361600-69378200	Strong transcription	Adipose Nuclei	Adipose
26	chr14:69361600-69378600	Weak transcription	Fetal Heart	heart
27	chr14:69362000-69378600	Weak transcription	Right Atrium	heart
28	chr14:69362000-69378800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:69362000-69380400	Strong transcription	NHDF-Ad	bronchial
30	chr14:69362200-69377400	Strong transcription	Aorta	Aorta
31	chr14:69362600-69378600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr14:69362600-69389200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:69362600-69393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:69363200-69379400	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr14:69364200-69377800	Strong transcription	Fetal Muscle Leg	muscle
36	chr14:69364400-69377000	Strong transcription	Ovary	ovary
37	chr14:69364600-69377200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:69364600-69377200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr14:69366000-69382000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:69366200-69377000	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:69366200-69377800	Weak transcription	Fetal Kidney	kidney
42	chr14:69366400-69376800	Strong transcription	Gastric	stomach
43	chr14:69366400-69377000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:69366400-69378400	Strong transcription	HUVEC	blood vessel
45	chr14:69366600-69378200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr14:69366600-69378400	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr14:69366600-69378600	Strong transcription	Osteobl	bone
48	chr14:69366800-69377000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr14:69367000-69377200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:69367000-69378200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links