Variant report
| Variant | rs10149565 |
|---|---|
| Chromosome Location | chr14:80093526-80093527 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:75411249..75412759-chr14:80091668..80094082,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12587614 | 0.89[EUR][1000 genomes] |
| rs17109557 | 0.89[EUR][1000 genomes] |
| rs17109610 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17109612 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17109616 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap] |
| rs17109652 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17109654 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17109658 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17109704 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2270446 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2371057 | 0.89[EUR][1000 genomes] |
| rs28407338 | 0.95[AFR][1000 genomes] |
| rs4448862 | 0.89[EUR][1000 genomes] |
| rs60570231 | 0.87[AFR][1000 genomes] |
| rs6574513 | 0.92[YRI][hapmap] |
| rs7143533 | 0.92[AFR][1000 genomes] |
| rs7146713 | 0.93[YRI][hapmap] |
| rs7147112 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs7149919 | 0.93[YRI][hapmap] |
| rs7154965 | 0.93[YRI][hapmap] |
| rs7158959 | 1.00[CEU][hapmap] |
| rs73327956 | 0.97[AFR][1000 genomes] |
| rs920122 | 0.89[EUR][1000 genomes] |
| rs920123 | 0.89[EUR][1000 genomes] |
| rs9652380 | 0.96[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs9806079 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039622 | chr14:79908702-80266601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv869542 | chr14:80009619-80118315 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
