Variant report

Variant	rs6574513
Chromosome Location	chr14:80084295-80084296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10147137	0.85[ASW][hapmap];0.86[LWK][hapmap];0.90[AMR][1000 genomes]
rs10149565	0.92[YRI][hapmap]
rs17109616	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs221501	0.86[YRI][hapmap]
rs28407338	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574516	0.81[AMR][1000 genomes]
rs7143533	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146713	1.00[YRI][hapmap]
rs7147112	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149919	1.00[YRI][hapmap]
rs7154965	1.00[YRI][hapmap]
rs73327956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329935	0.81[AMR][1000 genomes]
rs8021855	0.90[AMR][1000 genomes]
rs9652380	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806079	0.92[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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