Variant report

Variant	rs17109616
Chromosome Location	chr14:80089716-80089717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10147137	0.86[ASW][hapmap];0.86[LWK][hapmap]
rs10149565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10483927	1.00[MEX][hapmap]
rs12586770	1.00[MEX][hapmap]
rs12587614	0.89[EUR][1000 genomes]
rs12587752	1.00[MEX][hapmap]
rs17109473	1.00[MEX][hapmap]
rs17109557	0.89[EUR][1000 genomes]
rs17109610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17109612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17109652	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109654	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17109658	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17109704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17109754	1.00[MEX][hapmap]
rs221501	0.86[YRI][hapmap]
rs2270446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2371057	0.89[EUR][1000 genomes]
rs28407338	0.91[AFR][1000 genomes]
rs4448862	0.89[EUR][1000 genomes]
rs60570231	0.85[AFR][1000 genomes]
rs6574513	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs7143533	0.89[AFR][1000 genomes]
rs7146713	1.00[YRI][hapmap]
rs7147112	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs7149919	1.00[YRI][hapmap]
rs7154965	1.00[YRI][hapmap]
rs7158959	1.00[CEU][hapmap]
rs73327956	0.93[AFR][1000 genomes]
rs920122	0.89[EUR][1000 genomes]
rs920123	0.89[EUR][1000 genomes]
rs9652380	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs9806079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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