Variant report
| Variant | rs10149704 |
|---|---|
| Chromosome Location | chr14:84281234-84281235 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:84270158..84272382-chr14:84279321..84281475,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258549 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10137336 | 0.89[ASN][1000 genomes] |
| rs10146014 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10149682 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10150517 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12586637 | 0.87[ASN][1000 genomes] |
| rs12588002 | 0.91[ASN][1000 genomes] |
| rs1511318 | 0.93[ASN][1000 genomes] |
| rs1698258 | 0.96[ASN][1000 genomes] |
| rs1705662 | 0.98[ASN][1000 genomes] |
| rs17119147 | 0.89[ASN][1000 genomes] |
| rs17119189 | 0.85[ASN][1000 genomes] |
| rs17637116 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17643817 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17710375 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17711443 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17711598 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28693875 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55959064 | 0.85[ASN][1000 genomes] |
| rs57002888 | 0.96[ASN][1000 genomes] |
| rs59712100 | 0.83[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7145520 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7156850 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72697171 | 0.96[ASN][1000 genomes] |
| rs72697173 | 0.96[ASN][1000 genomes] |
| rs72697185 | 0.87[ASN][1000 genomes] |
| rs8003162 | 0.93[ASN][1000 genomes] |
| rs8003919 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9323741 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046869 | chr14:83749048-84284813 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv542152 | chr14:83749048-84284813 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2758365 | chr14:84136458-84293840 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2760003 | chr14:84136458-84293840 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv832844 | chr14:84136460-84293827 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:84280600-84284200 | Enhancers | Hela-S3 | cervix |
