Variant report
| Variant | rs8003919 |
|---|---|
| Chromosome Location | chr14:84311989-84311990 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10137336 | 0.91[ASN][1000 genomes] |
| rs10146014 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10149682 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10149704 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10150517 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12586637 | 0.93[ASN][1000 genomes] |
| rs12588002 | 0.89[ASN][1000 genomes] |
| rs1511318 | 0.87[ASN][1000 genomes] |
| rs1698258 | 0.85[ASN][1000 genomes] |
| rs1705662 | 0.83[ASN][1000 genomes] |
| rs17119147 | 0.91[ASN][1000 genomes] |
| rs17119189 | 0.91[ASN][1000 genomes] |
| rs17637116 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17643817 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17710375 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17711443 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17711598 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28693875 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs55959064 | 0.91[ASN][1000 genomes] |
| rs57002888 | 0.85[ASN][1000 genomes] |
| rs59712100 | 0.87[ASN][1000 genomes] |
| rs7156850 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72697171 | 0.85[ASN][1000 genomes] |
| rs72697173 | 0.85[ASN][1000 genomes] |
| rs72697185 | 0.93[ASN][1000 genomes] |
| rs8003162 | 0.87[ASN][1000 genomes] |
| rs9323741 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751287 | chr14:84294487-84338247 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv565375 | chr14:84299666-84336944 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1054166 | chr14:84299761-84338200 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1036610 | chr14:84299761-84338626 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1051093 | chr14:84303380-84338626 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv431019 | chr14:84303525-84365447 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv976839 | chr14:84309923-84314033 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv520014 | chr14:84311967-84336944 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:84309400-84313800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr14:84309600-84315200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
