Variant report

Variant	rs10149930
Chromosome Location	chr14:32882641-32882642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32730953..32733918-chr14:32882288..32884788,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10141597	1.00[YRI][hapmap]
rs10149776	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620931	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17098938	0.92[CEU][hapmap]
rs17098983	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs17098990	0.83[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1957002	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28547895	0.81[AFR][1000 genomes]
rs3784175	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32867600-32882800	Weak transcription	Fetal Brain Female	brain
2	chr14:32870200-32883000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32876800-32895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:32877000-32883200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:32877400-32882800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:32877400-32886000	Weak transcription	HSMMtube	muscle
7	chr14:32877600-32886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:32878200-32883000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:32878600-32883200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:32879000-32883200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:32879200-32883200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:32879600-32883200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:32880200-32884400	Enhancers	Brain Anterior Caudate	brain
14	chr14:32880200-32884600	Enhancers	Brain Angular Gyrus	brain
15	chr14:32880200-32889000	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:32880400-32883200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:32880600-32884400	Enhancers	Brain Substantia Nigra	brain
18	chr14:32881600-32887000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:32881800-32883400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr14:32882000-32883200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:32882000-32883200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:32882000-32884400	Enhancers	Colon Smooth Muscle	Colon
23	chr14:32882400-32882800	Enhancers	Left Ventricle	heart
24	chr14:32882600-32883600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:32882600-32883800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr14:32882600-32884200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:32882600-32884400	Enhancers	Fetal Heart	heart
28	chr14:32882600-32884600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr14:32882600-32888800	Enhancers	Brain Hippocampus Middle	brain

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