Variant report

Variant	rs10151061
Chromosome Location	chr14:45365529-45365530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:45365466-45366303	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:45365431-45368515	HepG2	liver:	n/a	n/a
3	HEY1	chr14:45365357-45365792	HepG2	liver:	n/a	n/a
4	HCFC1	chr14:45365497-45367669	Hela-S3	cervix:	n/a	n/a
5	TBP	chr14:45365477-45367325	HepG2	liver:	n/a	n/a
6	HEY1	chr14:45365500-45365940	HepG2	liver:	n/a	n/a
7	BHLHE40	chr14:45365529-45367156	HepG2	liver:	n/a	chr14:45366714-45366730 chr14:45366725-45366741 chr14:45366584-45366600 chr14:45366579-45366595

No.	Distal block	Cell Line	Cell type
1	chr14:45365477..45369212-chr14:45721451..45724440,3	MCF-7	breast:
2	chr14:45355758..45358329-chr14:45365529..45367662,3	MCF-7	breast:
3	chr14:45365342..45368511-chr14:45602012..45605909,4	MCF-7	breast:
4	chr14:45364937..45368444-chr14:45721075..45725396,9	MCF-7	breast:
5	chr1:117452390..117454247-chr14:45365454..45368358,2	MCF-7	breast:
6	chr11:65485409..65487052-chr14:45365480..45368085,2	MCF-7	breast:

Variant related genes	Relation type
C14orf28	TF binding region
ENSG00000187790	Chromatin interaction
ENSG00000259046	Chromatin interaction
ENSG00000134247	Chromatin interaction
ENSG00000258509	Chromatin interaction
ENSG00000100442	Chromatin interaction
ENSG00000129534	Chromatin interaction
ENSG00000172977	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10129456	1.00[AMR][1000 genomes]
rs10130162	1.00[AMR][1000 genomes]
rs10130287	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131349	1.00[AMR][1000 genomes]
rs10131585	0.83[AMR][1000 genomes]
rs10131972	1.00[AMR][1000 genomes]
rs10132260	1.00[AMR][1000 genomes]
rs10132311	1.00[AMR][1000 genomes]
rs10132401	1.00[AMR][1000 genomes]
rs10132454	1.00[AMR][1000 genomes]
rs10132492	1.00[AMR][1000 genomes]
rs10132637	1.00[AMR][1000 genomes]
rs10132697	1.00[AMR][1000 genomes]
rs10133723	1.00[AMR][1000 genomes]
rs10134083	1.00[AMR][1000 genomes]
rs10135422	1.00[AMR][1000 genomes]
rs10135653	1.00[AMR][1000 genomes]
rs10139121	1.00[AMR][1000 genomes]
rs10139464	1.00[AMR][1000 genomes]
rs10140308	1.00[AMR][1000 genomes]
rs10140534	1.00[AMR][1000 genomes]
rs10140661	1.00[AMR][1000 genomes]
rs10142928	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143572	1.00[AMR][1000 genomes]
rs10144179	0.83[AMR][1000 genomes]
rs10145279	1.00[AMR][1000 genomes]
rs10145792	1.00[AMR][1000 genomes]
rs10145979	1.00[AMR][1000 genomes]
rs10146384	1.00[AMR][1000 genomes]
rs10146930	1.00[AMR][1000 genomes]
rs10147794	1.00[AMR][1000 genomes]
rs10147950	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148765	1.00[AMR][1000 genomes]
rs10150272	1.00[AMR][1000 genomes]
rs10450913	1.00[AMR][1000 genomes]
rs11157429	1.00[AMR][1000 genomes]
rs12100992	1.00[AMR][1000 genomes]
rs17092470	1.00[AMR][1000 genomes]
rs17092482	1.00[AMR][1000 genomes]
rs17115721	1.00[AMR][1000 genomes]
rs17115737	1.00[AMR][1000 genomes]
rs17115745	0.83[AMR][1000 genomes]
rs28403384	1.00[AMR][1000 genomes]
rs28513220	1.00[AMR][1000 genomes]
rs28520409	1.00[AMR][1000 genomes]
rs28536084	1.00[AMR][1000 genomes]
rs28544334	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682279	1.00[AMR][1000 genomes]
rs28685885	1.00[AMR][1000 genomes]
rs28688045	1.00[AMR][1000 genomes]
rs28690299	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28802144	1.00[AMR][1000 genomes]
rs28831119	1.00[AMR][1000 genomes]
rs4497593	1.00[AMR][1000 genomes]
rs57818319	1.00[AMR][1000 genomes]
rs59432531	1.00[AMR][1000 genomes]
rs60726876	1.00[AMR][1000 genomes]
rs7143763	1.00[AMR][1000 genomes]
rs8003388	1.00[AMR][1000 genomes]
rs8008121	1.00[AMR][1000 genomes]
rs8010366	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022599	1.00[AMR][1000 genomes]
rs879340	1.00[AMR][1000 genomes]
rs961194	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv995092	chr14:44973489-45393462	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
7	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	esv3355498	chr14:45365427-45368175	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45359400-45365800	Weak transcription	Fetal Kidney	kidney
2	chr14:45359800-45365600	Weak transcription	Fetal Heart	heart
3	chr14:45360000-45365600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:45360400-45365800	Weak transcription	Fetal Lung	lung
5	chr14:45361400-45365600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:45364600-45366200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:45365000-45365800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:45365000-45365800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:45365000-45365800	Enhancers	HMEC	breast
10	chr14:45365000-45368800	Active TSS	Stomach Smooth Muscle	stomach
11	chr14:45365200-45365600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:45365200-45365600	Enhancers	NHLF	lung
13	chr14:45365200-45365800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:45365200-45365800	Flanking Active TSS	HepG2	liver
15	chr14:45365200-45365800	Enhancers	HSMM	muscle
16	chr14:45365200-45366000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:45365400-45365600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr14:45365400-45365600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:45365400-45365600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:45365400-45365600	Enhancers	Brain Substantia Nigra	brain
21	chr14:45365400-45365600	Enhancers	Colon Smooth Muscle	Colon
22	chr14:45365400-45365600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr14:45365400-45365600	Enhancers	Dnd41	blood
24	chr14:45365400-45365800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr14:45365400-45365800	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr14:45365400-45365800	Enhancers	Small Intestine	intestine
27	chr14:45365400-45365800	Enhancers	HSMMtube	muscle
28	chr14:45365400-45365800	Enhancers	NHEK	skin
29	chr14:45365400-45366000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:45365400-45366000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:45365400-45366000	Flanking Active TSS	NH-A	brain
32	chr14:45365400-45366000	Flanking Active TSS	NHDF-Ad	bronchial
33	chr14:45365400-45366000	Flanking Active TSS	Osteobl	bone
34	chr14:45365400-45366200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:45365400-45368000	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links