Variant report

Variant	rs10132637
Chromosome Location	chr14:45451511-45451512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:45427812..45430166-chr14:45450519..45452752,2	MCF-7	breast:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10129456	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs10130162	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130287	1.00[AMR][1000 genomes]
rs10131349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131585	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10131595	0.89[YRI][hapmap]
rs10131972	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132401	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132454	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132492	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs10132697	1.00[AMR][1000 genomes]
rs10132762	1.00[MEX][hapmap]
rs10133723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134083	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135653	1.00[ASW][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138405	0.91[AFR][1000 genomes]
rs10139121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139464	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140308	1.00[ASW][hapmap];0.90[LWK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140534	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143572	0.87[ASW][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs10144179	0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10144729	0.90[YRI][hapmap]
rs10145279	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145792	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145979	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146650	0.87[ASW][hapmap]
rs10146732	0.86[AFR][1000 genomes]
rs10146930	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147413	1.00[MEX][hapmap]
rs10147547	0.89[YRI][hapmap]
rs10147794	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147950	1.00[AMR][1000 genomes]
rs10148765	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149416	0.91[AFR][1000 genomes]
rs10149748	0.94[YRI][hapmap]
rs10150272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151061	1.00[AMR][1000 genomes]
rs10450913	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11157429	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100992	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101074	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs17092470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17092482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115678	1.00[MEX][hapmap]
rs17115714	0.89[YRI][hapmap]
rs17115721	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115735	0.90[YRI][hapmap]
rs17115737	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115745	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17115866	1.00[MEX][hapmap]
rs28403384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28406098	0.87[ASW][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs28408667	0.83[YRI][hapmap]
rs28469277	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs28513185	0.83[AFR][1000 genomes]
rs28513220	1.00[AMR][1000 genomes]
rs28520409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536084	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28544334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685885	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690299	1.00[AMR][1000 genomes]
rs28802144	1.00[ASW][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28831119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4497593	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57818319	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59432531	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60726876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143763	1.00[ASW][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153359	1.00[MEX][hapmap]
rs8003388	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8008121	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010366	1.00[AMR][1000 genomes]
rs8017226	1.00[MEX][hapmap]
rs8022599	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs879340	1.00[AMR][1000 genomes]
rs961194	1.00[ASW][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv1042585	chr14:45401506-45497907	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1045869	chr14:45415597-45487903	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv1801436	chr14:45441932-45476174	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1038384	chr14:45447187-45521583	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45434600-45465000	Weak transcription	Fetal Thymus	thymus
2	chr14:45436200-45486600	Weak transcription	Gastric	stomach
3	chr14:45436800-45461400	Weak transcription	K562	blood
4	chr14:45437000-45451800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:45437000-45465000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:45437000-45465800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:45437000-45473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:45437000-45496000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:45437000-45507400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:45437000-45514600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:45437200-45466000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:45437200-45469400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:45438000-45501800	Weak transcription	Fetal Kidney	kidney
14	chr14:45438200-45465400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:45438600-45451800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:45439200-45464400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:45440000-45465400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:45440400-45465800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:45441400-45469400	Weak transcription	Primary T cells from cord blood	blood
20	chr14:45442200-45458000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr14:45442800-45457800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:45444400-45452000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:45444400-45452400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:45444600-45451800	Weak transcription	GM12878-XiMat	blood
25	chr14:45448600-45455600	Weak transcription	Fetal Intestine Small	intestine
26	chr14:45448800-45458000	Weak transcription	Right Atrium	heart
27	chr14:45449200-45454400	Weak transcription	Primary B cells from cord blood	blood
28	chr14:45449200-45457800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:45449200-45460000	Weak transcription	Stomach Mucosa	stomach
30	chr14:45449200-45466000	Weak transcription	Fetal Intestine Large	intestine
31	chr14:45449400-45451600	Weak transcription	Brain Angular Gyrus	brain
32	chr14:45449400-45451600	Weak transcription	Brain Anterior Caudate	brain
33	chr14:45449400-45452000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:45449400-45452200	Weak transcription	Fetal Brain Female	brain
35	chr14:45449400-45482000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr14:45449600-45451600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:45449600-45459200	Weak transcription	Brain Substantia Nigra	brain
38	chr14:45449800-45451600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr14:45449800-45451600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr14:45449800-45465800	Weak transcription	Fetal Stomach	stomach
41	chr14:45450000-45452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:45450000-45457800	Weak transcription	Fetal Muscle Leg	muscle
43	chr14:45450000-45457800	Weak transcription	Left Ventricle	heart
44	chr14:45450000-45458000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr14:45450000-45501800	Weak transcription	Lung	lung
46	chr14:45451000-45451800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:45451400-45452800	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr14:45451400-45458200	Weak transcription	Psoas Muscle	Psoas
49	chr14:45451400-45466000	Weak transcription	Aorta	Aorta

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