Variant report

Variant	rs8010366
Chromosome Location	chr14:45416026-45416027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:45414626..45416449-chr14:45423865..45425527,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10129201	0.94[AFR][1000 genomes]
rs10129456	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130162	1.00[AMR][1000 genomes]
rs10130287	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131349	1.00[AMR][1000 genomes]
rs10131585	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10131595	0.90[AFR][1000 genomes]
rs10131972	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132260	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132311	1.00[AMR][1000 genomes]
rs10132401	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132454	1.00[AMR][1000 genomes]
rs10132492	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132637	1.00[AMR][1000 genomes]
rs10132697	1.00[AMR][1000 genomes]
rs10133723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134083	1.00[AMR][1000 genomes]
rs10135422	1.00[AMR][1000 genomes]
rs10135494	0.91[AFR][1000 genomes]
rs10135653	1.00[AMR][1000 genomes]
rs10139121	1.00[AMR][1000 genomes]
rs10139464	1.00[AMR][1000 genomes]
rs10140308	1.00[AMR][1000 genomes]
rs10140534	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140661	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142928	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143572	1.00[AMR][1000 genomes]
rs10144179	0.83[AMR][1000 genomes]
rs10145279	1.00[AMR][1000 genomes]
rs10145792	1.00[AMR][1000 genomes]
rs10145979	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146384	1.00[AMR][1000 genomes]
rs10146930	1.00[AMR][1000 genomes]
rs10147547	0.94[AFR][1000 genomes]
rs10147794	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148765	1.00[AMR][1000 genomes]
rs10149748	0.94[AFR][1000 genomes]
rs10150272	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151061	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450913	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11157429	1.00[AMR][1000 genomes]
rs12100992	1.00[AMR][1000 genomes]
rs17092470	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17092482	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115714	0.87[AFR][1000 genomes]
rs17115721	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115745	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28403384	1.00[AMR][1000 genomes]
rs28513220	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28520409	1.00[AMR][1000 genomes]
rs28536084	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28544334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682279	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685885	1.00[AMR][1000 genomes]
rs28688045	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28802144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28831119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4497593	1.00[AMR][1000 genomes]
rs57818319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59432531	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60726876	1.00[AMR][1000 genomes]
rs7143763	1.00[AMR][1000 genomes]
rs8003388	1.00[AMR][1000 genomes]
rs8008121	1.00[AMR][1000 genomes]
rs8022599	1.00[AMR][1000 genomes]
rs879340	1.00[AMR][1000 genomes]
rs961194	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	nsv1042585	chr14:45401506-45497907	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1045869	chr14:45415597-45487903	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45395600-45416200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:45396200-45428400	Weak transcription	HMEC	breast
3	chr14:45396600-45416400	Weak transcription	Psoas Muscle	Psoas
4	chr14:45397000-45417000	Weak transcription	Stomach Mucosa	stomach
5	chr14:45402000-45430000	Weak transcription	Colonic Mucosa	Colon
6	chr14:45405400-45416800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:45405600-45417200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:45405800-45416600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr14:45407400-45416600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:45407800-45428600	Weak transcription	K562	blood
11	chr14:45408400-45429000	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:45408600-45416400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:45408600-45418600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:45408600-45430400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:45409400-45429600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:45409600-45416400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:45409600-45419600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:45410400-45416200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:45410600-45416200	Weak transcription	Fetal Intestine Small	intestine
20	chr14:45410600-45429200	Weak transcription	Brain Germinal Matrix	brain
21	chr14:45410800-45420400	Weak transcription	Fetal Stomach	stomach
22	chr14:45411200-45417000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:45411600-45417600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:45411800-45421400	Strong transcription	Primary B cells from cord blood	blood
25	chr14:45412800-45416800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:45413000-45416800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr14:45413000-45417200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr14:45413000-45417200	Strong transcription	Fetal Thymus	thymus
29	chr14:45413200-45428400	Weak transcription	Fetal Brain Female	brain
30	chr14:45413600-45417600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:45413800-45416800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr14:45413800-45416800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:45413800-45416800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr14:45413800-45417400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr14:45413800-45429200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:45414000-45417200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr14:45414200-45416400	Strong transcription	Primary T cells from cord blood	blood
38	chr14:45414200-45416600	Strong transcription	Thymus	Thymus
39	chr14:45414800-45427600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:45414800-45427600	Weak transcription	HSMMtube	muscle
41	chr14:45414800-45429200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr14:45415000-45416200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr14:45415000-45416200	Weak transcription	Brain Substantia Nigra	brain
44	chr14:45415000-45416200	Weak transcription	Fetal Muscle Leg	muscle
45	chr14:45415000-45416400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:45415000-45416400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr14:45415000-45416400	Weak transcription	Esophagus	oesophagus
48	chr14:45415000-45416400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:45415000-45419000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:45415000-45419000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links