Variant report

Variant	rs10147547
Chromosome Location	chr14:45408384-45408385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FKBP3-7	chr14:45407755-45409773	NONHSAT036628

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10129201	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129456	0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs10130287	0.80[AFR][1000 genomes]
rs10131595	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131972	0.86[YRI][hapmap]
rs10132401	0.86[YRI][hapmap]
rs10132454	0.86[YRI][hapmap]
rs10132492	0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs10132637	0.89[YRI][hapmap]
rs10134083	0.84[YRI][hapmap]
rs10134385	1.00[AMR][1000 genomes]
rs10135494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139464	0.95[YRI][hapmap]
rs10140308	0.84[YRI][hapmap]
rs10140534	0.82[YRI][hapmap]
rs10142928	0.87[AFR][1000 genomes]
rs10143572	0.94[YRI][hapmap]
rs10144179	0.86[YRI][hapmap]
rs10145279	0.84[YRI][hapmap]
rs10145979	0.86[YRI][hapmap]
rs10146650	1.00[AMR][1000 genomes]
rs10146732	1.00[AMR][1000 genomes]
rs10146930	0.86[YRI][hapmap]
rs10147794	0.86[YRI][hapmap]
rs10147950	0.91[AFR][1000 genomes]
rs10148765	0.84[YRI][hapmap]
rs10149748	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11157429	0.86[YRI][hapmap]
rs12100992	0.86[YRI][hapmap]
rs12101074	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17115714	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115721	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs17115737	1.00[YRI][hapmap]
rs17115745	0.84[YRI][hapmap]
rs17115814	1.00[AMR][1000 genomes]
rs28406098	0.85[YRI][hapmap]
rs28408667	0.83[YRI][hapmap]
rs28469277	0.84[YRI][hapmap]
rs28513185	1.00[AMR][1000 genomes]
rs28513220	0.80[AFR][1000 genomes]
rs28544334	0.89[AFR][1000 genomes]
rs28690299	0.92[AFR][1000 genomes]
rs28802144	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs28831119	0.85[AFR][1000 genomes]
rs7143763	0.84[YRI][hapmap]
rs8003388	0.86[YRI][hapmap]
rs8010366	0.94[AFR][1000 genomes]
rs961194	0.94[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
9	nsv1042585	chr14:45401506-45497907	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45390600-45408400	Weak transcription	Fetal Brain Female	brain
2	chr14:45391200-45411000	Weak transcription	HSMM	muscle
3	chr14:45391200-45413000	Weak transcription	HUVEC	blood vessel
4	chr14:45394200-45413800	Weak transcription	HepG2	liver
5	chr14:45395200-45412400	Weak transcription	Brain Anterior Caudate	brain
6	chr14:45395200-45413800	Weak transcription	Fetal Brain Male	brain
7	chr14:45395400-45414400	Weak transcription	NH-A	brain
8	chr14:45395600-45416200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:45396200-45428400	Weak transcription	HMEC	breast
10	chr14:45396600-45414200	Weak transcription	Ovary	ovary
11	chr14:45396600-45416400	Weak transcription	Psoas Muscle	Psoas
12	chr14:45396800-45413000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:45396800-45414200	Weak transcription	Fetal Heart	heart
14	chr14:45397000-45414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:45397000-45417000	Weak transcription	Stomach Mucosa	stomach
16	chr14:45397800-45409400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:45397800-45414200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:45398400-45414400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:45401000-45414200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:45401400-45408800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr14:45401400-45411200	Weak transcription	NHDF-Ad	bronchial
22	chr14:45401800-45411200	Weak transcription	Brain Substantia Nigra	brain
23	chr14:45402000-45430000	Weak transcription	Colonic Mucosa	Colon
24	chr14:45402200-45409200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:45402400-45414400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:45403200-45410600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr14:45403200-45415400	Strong transcription	Dnd41	blood
28	chr14:45403400-45410400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr14:45403800-45409200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:45404200-45409400	Strong transcription	Primary T cells from cord blood	blood
31	chr14:45404800-45408600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:45405000-45414200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:45405200-45414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:45405400-45416800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:45405600-45408400	Strong transcription	Colon Smooth Muscle	Colon
36	chr14:45405600-45410400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr14:45405600-45411400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr14:45405600-45415200	Strong transcription	Fetal Lung	lung
39	chr14:45405600-45417200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:45405800-45409400	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:45405800-45410600	Strong transcription	Fetal Intestine Large	intestine
42	chr14:45405800-45412000	Strong transcription	Liver	Liver
43	chr14:45405800-45416600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr14:45406000-45410600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr14:45406400-45409600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr14:45406600-45408600	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr14:45406600-45408600	Strong transcription	Fetal Kidney	kidney
48	chr14:45406600-45409000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr14:45406600-45409600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:45406600-45410400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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