Variant report

Variant	rs12101074
Chromosome Location	chr14:45568246-45568247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:45552156..45555644-chr14:45564630..45569930,7	MCF-7	breast:
2	chr14:45552768..45554716-chr14:45567074..45568600,2	K562	blood:
3	chr14:45566188..45569592-chr14:45598082..45601268,3	K562	blood:
4	chr14:45552391..45554924-chr14:45567685..45570510,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100442	Chromatin interaction
ENSG00000185246	Chromatin interaction
ENSG00000249163	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10129201	1.00[AMR][1000 genomes]
rs10129456	0.83[YRI][hapmap]
rs10130162	0.81[AFR][1000 genomes]
rs10131349	0.81[AFR][1000 genomes]
rs10131585	0.82[AFR][1000 genomes]
rs10131595	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10131972	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs10132260	0.81[AFR][1000 genomes]
rs10132401	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs10132454	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10132492	0.83[YRI][hapmap]
rs10132637	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs10133723	0.81[AFR][1000 genomes]
rs10134083	0.90[YRI][hapmap]
rs10134385	1.00[AMR][1000 genomes]
rs10135422	0.84[AFR][1000 genomes]
rs10135494	1.00[AMR][1000 genomes]
rs10135653	0.80[YRI][hapmap]
rs10139121	0.81[AFR][1000 genomes]
rs10139464	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs10140308	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs10140534	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs10140661	0.82[AFR][1000 genomes]
rs10143572	0.80[YRI][hapmap]
rs10144179	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs10144729	0.85[YRI][hapmap]
rs10145279	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs10145979	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs10146384	0.81[AFR][1000 genomes]
rs10146650	0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146930	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs10147547	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10147794	0.91[YRI][hapmap]
rs10148765	0.90[YRI][hapmap]
rs10149748	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs10150272	0.82[AFR][1000 genomes]
rs11157429	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs12100992	0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs17092470	0.82[AFR][1000 genomes]
rs17092482	0.82[AFR][1000 genomes]
rs17115714	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17115721	0.83[YRI][hapmap]
rs17115735	0.85[YRI][hapmap]
rs17115737	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs17115745	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs17115814	1.00[AMR][1000 genomes]
rs28403384	0.81[AFR][1000 genomes]
rs28406098	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs28408667	0.80[YRI][hapmap]
rs28469277	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs28513185	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28520409	0.81[AFR][1000 genomes]
rs28536084	0.82[AFR][1000 genomes]
rs28682279	0.82[AFR][1000 genomes]
rs28685885	0.81[AFR][1000 genomes]
rs28688045	0.82[AFR][1000 genomes]
rs28802144	0.80[YRI][hapmap]
rs4497593	0.81[AFR][1000 genomes]
rs57818319	0.81[AFR][1000 genomes]
rs59432531	0.81[AFR][1000 genomes]
rs7143763	0.90[YRI][hapmap]
rs73340651	0.88[AFR][1000 genomes]
rs8003388	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs8022599	0.81[AFR][1000 genomes]
rs961194	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv933364	chr14:45467086-45705844	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv901842	chr14:45506857-45713358	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv901843	chr14:45506857-45833490	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv832785	chr14:45520670-45710741	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45554000-45568600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:45554000-45585400	Weak transcription	Gastric	stomach
3	chr14:45554400-45568600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:45554400-45578800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:45554400-45585400	Weak transcription	Esophagus	oesophagus
6	chr14:45554600-45576600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:45554600-45602600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:45555000-45569200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:45555000-45577000	Weak transcription	Aorta	Aorta
10	chr14:45555000-45586200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:45555200-45579000	Weak transcription	Stomach Mucosa	stomach
12	chr14:45555400-45569200	Weak transcription	Right Ventricle	heart
13	chr14:45555400-45574600	Weak transcription	Ovary	ovary
14	chr14:45555800-45573600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:45556200-45573800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:45556400-45582000	Weak transcription	Fetal Brain Male	brain
17	chr14:45557400-45602200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:45558000-45571800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr14:45559000-45568600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:45559000-45591800	Weak transcription	Small Intestine	intestine
21	chr14:45559200-45569200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:45560000-45569400	Weak transcription	NHLF	lung
23	chr14:45560200-45582000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:45560200-45599800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:45562000-45599200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:45563400-45579200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:45563400-45598600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:45563600-45568400	Strong transcription	A549	lung
29	chr14:45563600-45570800	Strong transcription	Primary hematopoietic stem cells	blood
30	chr14:45563600-45578400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:45563600-45579200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:45563600-45580400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr14:45563600-45599600	Strong transcription	Dnd41	blood
34	chr14:45563800-45601600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:45564000-45574000	Strong transcription	Primary B cells from cord blood	blood
36	chr14:45564000-45592800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:45564000-45595000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:45564000-45596200	Strong transcription	Placenta	Placenta
39	chr14:45564000-45599200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:45564000-45599800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:45564000-45600200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:45564200-45568400	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:45564200-45570200	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr14:45564200-45581200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:45564200-45582200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:45564200-45589200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:45564200-45593400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr14:45564200-45599200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr14:45564200-45599200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr14:45564200-45599200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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