Variant report

Variant	rs10151608
Chromosome Location	chr14:65691934-65691935
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr14:65691459-65692687	GM12878	blood:	n/a	n/a
2	RUNX3	chr14:65691391-65692799	GM12878	blood:	n/a	chr14:65692187-65692196 chr14:65692187-65692196
3	NFIC	chr14:65691929-65692671	GM12878	blood:	n/a	n/a
4	MTA3	chr14:65691323-65692740	GM12878	blood:	n/a	n/a
5	RUNX3	chr14:65691472-65692805	GM12878	blood:	n/a	chr14:65692187-65692196 chr14:65692187-65692196
6	IKZF1	chr14:65691447-65692683	GM12878	blood:	n/a	chr14:65691820-65691828 chr14:65691947-65691959
7	SPI1	chr14:65691800-65692453	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:65685682..65688470-chr14:65691307..65693933,2	MCF-7	breast:
2	chr14:65684066..65685787-chr14:65691739..65693406,2	MCF-7	breast:
3	chr14:65689494..65692237-chr14:65695472..65698101,2	K562	blood:
4	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
5	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
6	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:
7	chr14:65681059..65683272-chr14:65691597..65694149,3	MCF-7	breast:
8	chr14:65647388..65649639-chr14:65690929..65693608,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255002	TF binding region
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10131273	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143368	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11846944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57425656	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7159220	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160062	0.80[ASN][1000 genomes]
rs7161060	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65688200-65696400	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65688400-65693000	Enhancers	Primary T cells from cord blood	blood
3	chr14:65688800-65692800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr14:65689000-65692400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:65689000-65692800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:65689000-65693000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:65689200-65692200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:65689200-65695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65689400-65692000	Weak transcription	A549	lung
10	chr14:65689400-65692800	Weak transcription	Right Atrium	heart
11	chr14:65689400-65693200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:65689400-65696200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:65689800-65692200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:65690000-65696600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:65690200-65692400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr14:65690400-65692400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:65690800-65692200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr14:65691000-65692400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:65691000-65692600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr14:65691000-65696400	Enhancers	Primary B cells from cord blood	blood
21	chr14:65691000-65696400	Enhancers	Brain Substantia Nigra	brain
22	chr14:65691200-65692400	Enhancers	Small Intestine	intestine
23	chr14:65691200-65692800	Enhancers	Primary hematopoietic stem cells	blood
24	chr14:65691200-65693000	Enhancers	Fetal Thymus	thymus
25	chr14:65691200-65695200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:65691200-65696400	Enhancers	Fetal Intestine Large	intestine
27	chr14:65691200-65696600	Enhancers	Placenta	Placenta
28	chr14:65691200-65696600	Enhancers	Stomach Mucosa	stomach
29	chr14:65691400-65692000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr14:65691400-65692000	Enhancers	HMEC	breast
31	chr14:65691400-65692000	Enhancers	Osteobl	bone
32	chr14:65691400-65692200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr14:65691400-65692200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr14:65691400-65692200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr14:65691400-65692200	Enhancers	Fetal Stomach	stomach
36	chr14:65691400-65692200	Enhancers	Spleen	Spleen
37	chr14:65691400-65692200	Enhancers	HUVEC	blood vessel
38	chr14:65691400-65692400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr14:65691400-65692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:65691400-65692400	Enhancers	Right Ventricle	heart
41	chr14:65691400-65692600	Flanking Active TSS	GM12878-XiMat	blood
42	chr14:65691400-65692800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr14:65691400-65692800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:65691400-65692800	Enhancers	Fetal Lung	lung
45	chr14:65691400-65692800	Enhancers	HepG2	liver
46	chr14:65691400-65693000	Enhancers	Lung	lung
47	chr14:65691400-65693200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:65691400-65693200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:65691400-65693400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr14:65691400-65693400	Enhancers	Brain Germinal Matrix	brain

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