Variant report

Variant	rs10151802
Chromosome Location	chr14:78302279-78302280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10132900	1.00[YRI][hapmap]
rs10141302	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10143701	0.91[YRI][hapmap]
rs11621071	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11622333	0.88[CEU][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11623841	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11624543	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11625402	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11625663	0.83[CEU][hapmap]
rs11628161	0.83[CEU][hapmap]
rs17753195	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1972615	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs28566696	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28653270	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4346144	0.83[CEU][hapmap]
rs58092208	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58940899	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60021537	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60330258	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7359160	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74063702	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74065815	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74065816	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74065820	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8019042	0.91[CEU][hapmap]
rs9323655	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323656	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78267200-78304200	Weak transcription	HSMMtube	muscle
2	chr14:78267200-78310800	Weak transcription	Esophagus	oesophagus
3	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:78283600-78311000	Weak transcription	Hela-S3	cervix
5	chr14:78284200-78309400	Weak transcription	Brain Germinal Matrix	brain
6	chr14:78284200-78312600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:78284800-78305200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:78285800-78305800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:78286200-78303000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:78286400-78303000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:78286400-78305200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:78287000-78309400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:78287000-78309600	Weak transcription	Osteobl	bone
14	chr14:78289200-78303400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:78289400-78305000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:78289400-78305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:78289400-78305200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:78289600-78303800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:78289600-78304600	Weak transcription	Brain Anterior Caudate	brain
20	chr14:78289600-78305000	Weak transcription	Fetal Thymus	thymus
21	chr14:78289600-78307000	Weak transcription	Colonic Mucosa	Colon
22	chr14:78289600-78311600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:78289800-78306000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:78289800-78309600	Weak transcription	Fetal Brain Female	brain
25	chr14:78290200-78305600	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:78292800-78305600	Weak transcription	Thymus	Thymus
27	chr14:78293000-78304200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:78293000-78304800	Weak transcription	Dnd41	blood
29	chr14:78293400-78331800	Weak transcription	Pancreas	Pancrea
30	chr14:78296400-78304200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr14:78296600-78303000	Strong transcription	Adipose Nuclei	Adipose
32	chr14:78297000-78310600	Weak transcription	Spleen	Spleen
33	chr14:78297400-78304000	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:78297600-78305800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:78297600-78311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:78297600-78324000	Weak transcription	Ovary	ovary
37	chr14:78297600-78336600	Weak transcription	Left Ventricle	heart
38	chr14:78297800-78304600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:78297800-78305800	Weak transcription	Primary B cells from cord blood	blood
40	chr14:78297800-78306600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr14:78297800-78311000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:78297800-78311200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:78298200-78311000	Weak transcription	Fetal Intestine Large	intestine
45	chr14:78298200-78311200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr14:78298400-78306800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:78299000-78304200	Weak transcription	Brain Substantia Nigra	brain
48	chr14:78299000-78305800	Weak transcription	Placenta	Placenta
49	chr14:78299000-78325200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr14:78299400-78302600	Weak transcription	Fetal Muscle Trunk	muscle

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