Variant report

Variant	rs7359160
Chromosome Location	chr14:78357311-78357312
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78346765..78348633-chr14:78356131..78358979,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10141302	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10151802	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11621071	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11622333	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11623841	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11624543	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11625402	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11625663	0.83[CEU][hapmap]
rs11628161	0.83[CEU][hapmap]
rs17106501	0.84[AFR][1000 genomes]
rs17753195	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1972615	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28566696	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28653270	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4346144	0.83[CEU][hapmap]
rs58092208	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58940899	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60021537	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60330258	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74063702	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74065815	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74065816	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323655	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9323656	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78327800-78400600	Weak transcription	Colonic Mucosa	Colon
2	chr14:78335800-78358600	Weak transcription	HSMMtube	muscle
3	chr14:78346600-78375600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:78347200-78366000	Weak transcription	Psoas Muscle	Psoas
5	chr14:78349200-78358200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:78349200-78397200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:78349200-78407200	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:78349400-78378000	Weak transcription	Fetal Brain Female	brain
9	chr14:78349800-78358400	Weak transcription	Stomach Mucosa	stomach
10	chr14:78350400-78361200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:78350600-78365400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:78350800-78375800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:78350800-78376200	Weak transcription	Brain Angular Gyrus	brain
14	chr14:78352600-78398800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:78353400-78358200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:78354000-78375800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:78354000-78375800	Weak transcription	Gastric	stomach
18	chr14:78354400-78374400	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:78354600-78359000	Weak transcription	Right Ventricle	heart
20	chr14:78354600-78360000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:78354600-78365400	Weak transcription	Brain Anterior Caudate	brain
22	chr14:78354600-78366800	Weak transcription	Fetal Stomach	stomach
23	chr14:78354600-78367400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr14:78354600-78368400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:78354600-78368600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:78354600-78375800	Weak transcription	Brain Substantia Nigra	brain
27	chr14:78354800-78357400	Weak transcription	Pancreas	Pancrea
28	chr14:78354800-78365400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:78354800-78379200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr14:78354800-78391600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:78355000-78357800	Weak transcription	K562	blood
32	chr14:78355000-78363000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:78355000-78365400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:78355000-78365400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr14:78355000-78374000	Weak transcription	Ovary	ovary
36	chr14:78355000-78375400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:78355000-78390800	Weak transcription	Spleen	Spleen
38	chr14:78355000-78391600	Weak transcription	Esophagus	oesophagus
39	chr14:78355200-78375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:78355400-78368400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr14:78355400-78370600	Weak transcription	Dnd41	blood
42	chr14:78355600-78398000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr14:78355800-78360200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:78356000-78368800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:78356000-78393600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr14:78356000-78398600	Weak transcription	Fetal Intestine Large	intestine
47	chr14:78356200-78357400	Weak transcription	Left Ventricle	heart
48	chr14:78356200-78358400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:78356200-78359400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr14:78356200-78390800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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