Variant report

Variant	rs11625402
Chromosome Location	chr14:78315051-78315052
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10141302	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10151802	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11621071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11622333	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11623841	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11624543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17753195	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1972615	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28566696	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28653270	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58092208	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58940899	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60021537	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60330258	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7359160	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74063702	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74065815	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74065816	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74065820	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9323655	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9323656	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78293400-78331800	Weak transcription	Pancreas	Pancrea
3	chr14:78297600-78324000	Weak transcription	Ovary	ovary
4	chr14:78297600-78336600	Weak transcription	Left Ventricle	heart
5	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:78299000-78325200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:78300000-78325400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:78301200-78325200	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:78301400-78315400	Weak transcription	Fetal Intestine Small	intestine
10	chr14:78301400-78325200	Weak transcription	Gastric	stomach
11	chr14:78301400-78325400	Weak transcription	Lung	lung
12	chr14:78301400-78342200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:78302200-78323200	Weak transcription	Right Ventricle	heart
14	chr14:78302200-78331000	Weak transcription	Liver	Liver
15	chr14:78303000-78321200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:78306000-78326400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:78306000-78328800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr14:78306000-78331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
20	chr14:78306600-78330400	Weak transcription	Dnd41	blood
21	chr14:78310000-78325200	Weak transcription	Brain Substantia Nigra	brain
22	chr14:78310000-78339400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:78310400-78345000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:78311600-78325000	Weak transcription	Primary T cells from cord blood	blood
25	chr14:78311800-78316600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:78313400-78326000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:78314200-78348400	Weak transcription	Colon Smooth Muscle	Colon

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