Variant report

Variant	rs10152400
Chromosome Location	chr8:63203013-63203014
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10047995	1.00[EUR][1000 genomes]
rs10518800	0.97[EUR][1000 genomes]
rs11852793	0.97[EUR][1000 genomes]
rs11853315	0.84[EUR][1000 genomes]
rs11855490	0.89[EUR][1000 genomes]
rs11858001	1.00[EUR][1000 genomes]
rs16976069	0.97[EUR][1000 genomes]
rs16976076	0.97[EUR][1000 genomes]
rs2414403	1.00[EUR][1000 genomes]
rs28565375	0.97[EUR][1000 genomes]
rs524935	0.97[EUR][1000 genomes]
rs58922764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59357544	0.97[EUR][1000 genomes]
rs59683414	0.89[EUR][1000 genomes]
rs60802234	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493764	1.00[EUR][1000 genomes]
rs6493765	1.00[EUR][1000 genomes]
rs7163677	1.00[EUR][1000 genomes]
rs7168226	0.89[EUR][1000 genomes]
rs7169357	1.00[EUR][1000 genomes]
rs73404044	0.89[EUR][1000 genomes]
rs73404055	0.89[EUR][1000 genomes]
rs73404072	0.97[EUR][1000 genomes]
rs73404076	0.97[EUR][1000 genomes]
rs73404078	0.97[EUR][1000 genomes]
rs73404093	0.97[EUR][1000 genomes]
rs73405810	1.00[EUR][1000 genomes]
rs73405811	1.00[EUR][1000 genomes]
rs73405825	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405883	1.00[EUR][1000 genomes]
rs73405887	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405889	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405890	1.00[EUR][1000 genomes]
rs73405894	0.97[EUR][1000 genomes]
rs73405895	0.97[EUR][1000 genomes]
rs73405898	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407806	0.97[EUR][1000 genomes]
rs73407807	0.97[EUR][1000 genomes]
rs73407809	0.97[EUR][1000 genomes]
rs73407811	0.97[EUR][1000 genomes]
rs73407814	0.97[EUR][1000 genomes]
rs73407815	0.97[EUR][1000 genomes]
rs73407816	0.97[EUR][1000 genomes]
rs73407817	0.97[EUR][1000 genomes]
rs73407821	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407823	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407850	0.92[EUR][1000 genomes]
rs73409840	0.92[EUR][1000 genomes]
rs74015506	0.92[EUR][1000 genomes]
rs74018312	0.89[EUR][1000 genomes]
rs8026190	0.84[EUR][1000 genomes]
rs8038091	0.97[EUR][1000 genomes]
rs8042411	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63191000-63209200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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