Variant report

Variant	rs6493764
Chromosome Location	chr15:55442672-55442673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:55441978..55444770-chr15:55453903..55455710,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10047995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10152400	1.00[EUR][1000 genomes]
rs10518800	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11852793	0.97[EUR][1000 genomes]
rs11853315	0.84[EUR][1000 genomes]
rs11855490	0.89[EUR][1000 genomes]
rs11858001	1.00[EUR][1000 genomes]
rs16976069	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16976076	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2414403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28565375	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs524935	0.97[EUR][1000 genomes]
rs58922764	1.00[EUR][1000 genomes]
rs59357544	0.97[EUR][1000 genomes]
rs59683414	0.89[EUR][1000 genomes]
rs60802234	1.00[EUR][1000 genomes]
rs6493765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163677	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168226	0.89[EUR][1000 genomes]
rs7169357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404044	0.89[EUR][1000 genomes]
rs73404055	0.89[EUR][1000 genomes]
rs73404072	0.97[EUR][1000 genomes]
rs73404076	0.97[EUR][1000 genomes]
rs73404078	0.97[EUR][1000 genomes]
rs73404093	0.97[EUR][1000 genomes]
rs73405810	1.00[EUR][1000 genomes]
rs73405811	1.00[EUR][1000 genomes]
rs73405825	1.00[EUR][1000 genomes]
rs73405883	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405887	1.00[EUR][1000 genomes]
rs73405889	1.00[EUR][1000 genomes]
rs73405890	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405894	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73405895	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73405898	1.00[EUR][1000 genomes]
rs73407806	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407807	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407809	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407811	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407814	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407815	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407816	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407817	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407821	1.00[EUR][1000 genomes]
rs73407823	1.00[EUR][1000 genomes]
rs73407850	0.92[EUR][1000 genomes]
rs73409840	0.92[EUR][1000 genomes]
rs74015506	0.92[EUR][1000 genomes]
rs74018312	0.89[EUR][1000 genomes]
rs8026190	0.84[EUR][1000 genomes]
rs8038091	0.97[EUR][1000 genomes]
rs8042411	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv457156	chr15:55400649-55466155	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv569521	chr15:55400649-55466155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55442400-55445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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