Variant report

Variant	rs73405883
Chromosome Location	chr15:55458470-55458471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:55456344..55458514-chr15:55459219..55462233,3	K562	blood:
2	chr15:55456931..55459282-chr15:55487662..55489408,2	K562	blood:
3	chr15:55455906..55459673-chr15:55485986..55489439,4	K562	blood:

Variant related genes	Relation type
ENSG00000137876	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10047995	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10152400	1.00[EUR][1000 genomes]
rs10518800	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11852793	0.97[EUR][1000 genomes]
rs11853315	0.84[EUR][1000 genomes]
rs11855490	0.89[EUR][1000 genomes]
rs11858001	1.00[EUR][1000 genomes]
rs16976069	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16976076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2414403	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28565375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs524935	0.97[EUR][1000 genomes]
rs58922764	1.00[EUR][1000 genomes]
rs59357544	0.97[EUR][1000 genomes]
rs59683414	0.89[EUR][1000 genomes]
rs60802234	1.00[EUR][1000 genomes]
rs6493764	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493765	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163677	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168226	0.89[EUR][1000 genomes]
rs7169357	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404044	0.89[EUR][1000 genomes]
rs73404055	0.89[EUR][1000 genomes]
rs73404072	0.97[EUR][1000 genomes]
rs73404076	0.97[EUR][1000 genomes]
rs73404078	0.97[EUR][1000 genomes]
rs73404093	0.97[EUR][1000 genomes]
rs73405810	1.00[EUR][1000 genomes]
rs73405811	1.00[EUR][1000 genomes]
rs73405825	1.00[EUR][1000 genomes]
rs73405887	1.00[EUR][1000 genomes]
rs73405889	1.00[EUR][1000 genomes]
rs73405890	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73405895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73405898	1.00[EUR][1000 genomes]
rs73407805	0.92[AFR][1000 genomes]
rs73407806	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407807	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407815	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407816	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407817	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73407821	1.00[EUR][1000 genomes]
rs73407823	1.00[EUR][1000 genomes]
rs73407850	0.92[EUR][1000 genomes]
rs73409840	0.92[EUR][1000 genomes]
rs74015506	0.92[EUR][1000 genomes]
rs74018312	0.89[EUR][1000 genomes]
rs8026190	0.84[EUR][1000 genomes]
rs8038091	0.97[EUR][1000 genomes]
rs8042411	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv457156	chr15:55400649-55466155	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv569521	chr15:55400649-55466155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55455600-55469600	Weak transcription	Aorta	Aorta
2	chr15:55455800-55487200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:55456400-55462000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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