Variant report

Variant	rs10152604
Chromosome Location	chr15:41320088-41320089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHAC1-4	chr15:41319787-41320091	ENSG00000259521.1

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10438298	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11638747	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12324153	1.00[AFR][1000 genomes]
rs12905314	0.80[AFR][1000 genomes]
rs12912131	1.00[AFR][1000 genomes]
rs13380096	0.81[AFR][1000 genomes]
rs28458829	1.00[AFR][1000 genomes]
rs28728367	0.85[AFR][1000 genomes]
rs2927055	0.80[AFR][1000 genomes]
rs2927056	0.80[AFR][1000 genomes]
rs2927065	1.00[AFR][1000 genomes]
rs2927066	1.00[AFR][1000 genomes]
rs4258583	0.85[AFR][1000 genomes]
rs4290447	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4609821	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs6492974	0.85[AFR][1000 genomes]
rs693424	0.81[AFR][1000 genomes]
rs7178326	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:41300200-41322400	Strong transcription	Primary T cells from cord blood	blood
5	chr15:41303200-41320200	Strong transcription	Hela-S3	cervix
6	chr15:41303400-41321800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:41303400-41323400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:41304800-41322200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:41306000-41322200	Strong transcription	Fetal Thymus	thymus
10	chr15:41306800-41338800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:41307600-41335000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:41308800-41331200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:41308800-41337000	Weak transcription	Colonic Mucosa	Colon
14	chr15:41309000-41339200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:41309400-41332600	Weak transcription	Gastric	stomach
16	chr15:41310000-41333200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:41310000-41333400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:41310200-41322400	Strong transcription	Duodenum Mucosa	Duodenum
19	chr15:41311000-41322200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr15:41311000-41328800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:41311400-41335400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:41313400-41332800	Weak transcription	Brain Angular Gyrus	brain
23	chr15:41313400-41333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:41313400-41336000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:41313400-41336200	Weak transcription	Brain Substantia Nigra	brain
26	chr15:41314000-41333000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:41314000-41335600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:41314600-41323800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:41314800-41331800	Weak transcription	Fetal Brain Male	brain
30	chr15:41315000-41320400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:41315000-41322400	Strong transcription	Liver	Liver
32	chr15:41315000-41325200	Weak transcription	NHEK	skin
33	chr15:41315600-41320200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:41316000-41323600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr15:41316200-41320200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:41316400-41320200	Strong transcription	K562	blood
37	chr15:41316400-41320800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:41316400-41321400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:41316400-41322000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:41316400-41322200	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr15:41316400-41322400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:41316600-41320200	Strong transcription	Primary B cells from cord blood	blood
43	chr15:41316600-41322000	Strong transcription	Placenta	Placenta
44	chr15:41316600-41322200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr15:41316600-41323000	Strong transcription	Fetal Intestine Large	intestine
46	chr15:41316800-41322800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:41316800-41323000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr15:41317000-41322200	Strong transcription	NH-A	brain
49	chr15:41317000-41327400	Weak transcription	Aorta	Aorta
50	chr15:41317000-41331600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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