Variant report

Variant	rs11638747
Chromosome Location	chr15:41267354-41267355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41265403..41268929-chr15:41273449..41275807,3	MCF-7	breast:
2	chr15:41264586..41267497-chr15:41281523..41283917,2	MCF-7	breast:
3	chr15:41231932..41234904-chr15:41266157..41268211,2	K562	blood:
4	chr15:41265160..41268430-chr15:41271742..41276727,5	K562	blood:
5	chr15:41220311..41223112-chr15:41267021..41268787,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction
ENSG00000128908	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10152604	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10438298	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12324153	0.85[AFR][1000 genomes]
rs12905314	0.85[AFR][1000 genomes]
rs12912131	0.85[AFR][1000 genomes]
rs28458829	0.85[AFR][1000 genomes]
rs2927065	0.85[AFR][1000 genomes]
rs2927066	0.85[AFR][1000 genomes]
rs4258583	1.00[AFR][1000 genomes]
rs4290447	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4609821	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6492974	1.00[AFR][1000 genomes]
rs7178326	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41246400-41268200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:41246600-41270000	Weak transcription	HUVEC	blood vessel
3	chr15:41246800-41268000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr15:41246800-41268200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:41249400-41268000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:41252400-41269400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:41252800-41270800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:41253600-41268200	Weak transcription	Spleen	Spleen
9	chr15:41253600-41268800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:41253600-41268800	Weak transcription	Right Ventricle	heart
11	chr15:41258600-41267600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:41258600-41268000	Weak transcription	Fetal Intestine Small	intestine
13	chr15:41258800-41267800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:41258800-41267800	Weak transcription	Lung	lung
15	chr15:41258800-41267800	Weak transcription	Ovary	ovary
16	chr15:41258800-41268000	Weak transcription	Colonic Mucosa	Colon
17	chr15:41258800-41268000	Weak transcription	Left Ventricle	heart
18	chr15:41258800-41268000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:41258800-41268200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:41258800-41268600	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:41258800-41268800	Weak transcription	Pancreas	Pancrea
22	chr15:41258800-41270400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:41258800-41270800	Weak transcription	Psoas Muscle	Psoas
24	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:41259000-41268000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:41259000-41268000	Weak transcription	Liver	Liver
27	chr15:41259200-41268200	Weak transcription	NHLF	lung
28	chr15:41259400-41267800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr15:41259400-41268000	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:41259400-41268000	Weak transcription	HSMMtube	muscle
31	chr15:41259400-41268800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:41259600-41268000	Weak transcription	Fetal Kidney	kidney
33	chr15:41260800-41268200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:41260800-41268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:41261200-41269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:41261800-41268000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:41261800-41268000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:41261800-41268800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:41262000-41268000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:41262000-41271400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:41263800-41268000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:41263800-41268000	Weak transcription	Thymus	Thymus
43	chr15:41264000-41268000	Weak transcription	Small Intestine	intestine
44	chr15:41264000-41268200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:41264000-41275400	Weak transcription	Fetal Brain Male	brain
46	chr15:41264400-41267600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:41264600-41267600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:41264600-41267800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr15:41264600-41268000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:41264600-41268000	Weak transcription	Fetal Thymus	thymus

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