Variant report

Variant	rs28458829
Chromosome Location	chr15:41331544-41331545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41330998..41333072-chr15:41336486..41338381,2	K562	blood:
2	chr15:41324923..41327886-chr15:41329412..41332242,2	K562	blood:
3	chr15:41326386..41328188-chr15:41329412..41331864,2	K562	blood:
4	chr15:41329741..41332656-chr15:41334948..41337041,4	K562	blood:
5	chr15:41330145..41332078-chr15:41334836..41336898,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10152604	1.00[AFR][1000 genomes]
rs10438298	0.80[AFR][1000 genomes]
rs11638747	0.85[AFR][1000 genomes]
rs12324153	1.00[AFR][1000 genomes]
rs12905314	0.80[AFR][1000 genomes]
rs12912131	1.00[AFR][1000 genomes]
rs13380096	0.81[AFR][1000 genomes]
rs28728367	0.85[AFR][1000 genomes]
rs2927055	0.80[AFR][1000 genomes]
rs2927056	0.80[AFR][1000 genomes]
rs2927065	1.00[AFR][1000 genomes]
rs2927066	1.00[AFR][1000 genomes]
rs4258583	0.85[AFR][1000 genomes]
rs4290447	0.85[AFR][1000 genomes]
rs4609821	0.80[AFR][1000 genomes]
rs6492974	0.85[AFR][1000 genomes]
rs693424	0.81[AFR][1000 genomes]
rs7178326	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:41306800-41338800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:41307600-41335000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:41308800-41337000	Weak transcription	Colonic Mucosa	Colon
7	chr15:41309000-41339200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:41309400-41332600	Weak transcription	Gastric	stomach
9	chr15:41310000-41333200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:41310000-41333400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:41311400-41335400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:41313400-41332800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:41313400-41333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:41313400-41336000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:41313400-41336200	Weak transcription	Brain Substantia Nigra	brain
16	chr15:41314000-41333000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:41314000-41335600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:41314800-41331800	Weak transcription	Fetal Brain Male	brain
19	chr15:41317000-41331600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr15:41317000-41332200	Weak transcription	Right Ventricle	heart
21	chr15:41317400-41331600	Weak transcription	Fetal Kidney	kidney
22	chr15:41317400-41331600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:41317400-41332200	Weak transcription	Ovary	ovary
24	chr15:41317600-41332200	Weak transcription	HSMMtube	muscle
25	chr15:41318400-41334400	Weak transcription	Small Intestine	intestine
26	chr15:41319400-41331600	Weak transcription	Fetal Brain Female	brain
27	chr15:41319400-41335000	Weak transcription	Brain Germinal Matrix	brain
28	chr15:41319400-41339800	Weak transcription	Psoas Muscle	Psoas
29	chr15:41319600-41332600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:41319600-41335000	Weak transcription	A549	lung
31	chr15:41319600-41337000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:41319800-41332200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:41319800-41332400	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:41320000-41331600	Weak transcription	NHLF	lung
35	chr15:41320000-41332400	Weak transcription	Thymus	Thymus
36	chr15:41320000-41337000	Weak transcription	Esophagus	oesophagus
37	chr15:41320000-41337200	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:41320200-41332800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:41320600-41332200	Weak transcription	Lung	lung
40	chr15:41320600-41332400	Weak transcription	Spleen	Spleen
41	chr15:41320600-41339400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:41321400-41331600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:41321600-41332600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:41322200-41331600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:41322200-41331600	Weak transcription	K562	blood
46	chr15:41322400-41332400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:41322800-41331600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:41324200-41332200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:41324400-41331600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:41324400-41350400	Weak transcription	Pancreas	Pancrea

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