Variant report
Variant | rs1015277 |
---|---|
Chromosome Location | chr14:84438074-84438075 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10134295 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11844203 | 0.80[EUR][1000 genomes] |
rs11846485 | 0.81[EUR][1000 genomes] |
rs11847648 | 0.80[EUR][1000 genomes] |
rs11851449 | 0.80[EUR][1000 genomes] |
rs11851578 | 0.80[EUR][1000 genomes] |
rs12432538 | 0.80[EUR][1000 genomes] |
rs17119313 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs17119545 | 0.80[EUR][1000 genomes] |
rs17119546 | 0.81[EUR][1000 genomes] |
rs17726085 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17727999 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs41407845 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs55682856 | 0.80[EUR][1000 genomes] |
rs56049832 | 0.87[EUR][1000 genomes] |
rs57196167 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs60773969 | 0.80[EUR][1000 genomes] |
rs7140245 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7154565 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7158225 | 0.81[EUR][1000 genomes] |
rs7161618 | 0.85[ASN][1000 genomes] |
rs72701037 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs72701046 | 0.80[EUR][1000 genomes] |
rs74071128 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv902159 | chr14:84336944-84447356 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv1039271 | chr14:84405561-84467550 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
3 | nsv974476 | chr14:84433622-84441212 | Active TSS Enhancers Weak transcription Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
4 | esv3530355 | chr14:84434092-84441019 | Enhancers Weak transcription Bivalent Enhancer Active TSS | n/a | n/a | inside rSNPs | n/a |
5 | esv3530357 | chr14:84434133-84441002 | Weak transcription Enhancers Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
6 | esv3530356 | chr14:84434156-84440953 | Weak transcription Active TSS Enhancers | n/a | n/a | inside rSNPs | n/a |
7 | esv11303 | chr14:84434221-84440941 | Active TSS Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
8 | esv3530359 | chr14:84434230-84440895 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
9 | esv2763074 | chr14:84435911-84439668 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
10 | nsv516829 | chr14:84437385-84438074 | Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:84436200-84440800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr14:84436600-84440000 | Weak transcription | Rectal Smooth Muscle | rectum |
3 | chr14:84436600-84442000 | Weak transcription | Ovary | ovary |
4 | chr14:84438000-84439600 | Active TSS | Pancreas | Pancrea |