Variant report

Variant	rs12432538
Chromosome Location	chr14:84438663-84438664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10131505	0.95[ASN][1000 genomes]
rs10132537	0.95[ASN][1000 genomes]
rs10133221	0.83[ASN][1000 genomes]
rs10137482	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10139559	0.88[ASN][1000 genomes]
rs10148456	0.86[ASN][1000 genomes]
rs10151367	0.86[ASN][1000 genomes]
rs1015277	0.80[EUR][1000 genomes]
rs11851518	0.86[ASN][1000 genomes]
rs12434360	0.86[ASN][1000 genomes]
rs12435170	0.91[ASN][1000 genomes]
rs12436496	0.85[ASN][1000 genomes]
rs12587047	0.88[ASN][1000 genomes]
rs12587356	0.82[ASN][1000 genomes]
rs12589135	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12590331	0.86[ASN][1000 genomes]
rs12590725	0.91[ASN][1000 genomes]
rs12887780	0.95[ASN][1000 genomes]
rs12887904	0.95[ASN][1000 genomes]
rs17119313	0.81[AFR][1000 genomes]
rs17119380	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17119453	0.84[ASN][1000 genomes]
rs1999279	0.95[ASN][1000 genomes]
rs2183523	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2210184	0.92[ASN][1000 genomes]
rs2210185	0.95[ASN][1000 genomes]
rs28793601	0.86[ASN][1000 genomes]
rs34326388	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4904151	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4904152	0.80[ASN][1000 genomes]
rs4904153	0.86[ASN][1000 genomes]
rs59954455	0.85[ASN][1000 genomes]
rs6574764	0.95[ASN][1000 genomes]
rs71412380	0.95[ASN][1000 genomes]
rs7142351	0.82[ASN][1000 genomes]
rs7148040	0.86[ASN][1000 genomes]
rs7153137	0.95[ASN][1000 genomes]
rs7154565	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7155319	0.82[ASN][1000 genomes]
rs72701039	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7493561	0.86[ASN][1000 genomes]
rs8007316	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022815	0.94[ASN][1000 genomes]
rs8022878	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs952821	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv974476	chr14:84433622-84441212	Active TSS Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv3530355	chr14:84434092-84441019	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3530357	chr14:84434133-84441002	Weak transcription Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	esv3530356	chr14:84434156-84440953	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv11303	chr14:84434221-84440941	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3530359	chr14:84434230-84440895	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv2763074	chr14:84435911-84439668	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84436200-84440800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:84436600-84440000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:84436600-84442000	Weak transcription	Ovary	ovary
4	chr14:84438000-84439600	Active TSS	Pancreas	Pancrea

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