Variant report

Variant	rs28793601
Chromosome Location	chr14:84489266-84489267
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10131505	0.81[ASN][1000 genomes]
rs10132537	0.81[ASN][1000 genomes]
rs10133221	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10137482	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139559	0.88[ASN][1000 genomes]
rs10148456	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151367	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851518	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12432538	0.86[ASN][1000 genomes]
rs12434360	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12435170	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12436496	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12587047	0.88[ASN][1000 genomes]
rs12587356	0.96[ASN][1000 genomes]
rs12589135	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12590331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590725	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12887780	0.81[ASN][1000 genomes]
rs12887904	0.81[ASN][1000 genomes]
rs17119380	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17119453	0.93[ASN][1000 genomes]
rs1999279	0.81[ASN][1000 genomes]
rs2183523	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2210185	0.81[ASN][1000 genomes]
rs34326388	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4904151	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4904152	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4904153	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59954455	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6574764	0.81[ASN][1000 genomes]
rs71412380	0.81[ASN][1000 genomes]
rs7142351	0.94[ASN][1000 genomes]
rs7148040	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153137	0.81[ASN][1000 genomes]
rs7155319	0.96[ASN][1000 genomes]
rs72701039	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7493561	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007316	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022815	0.80[ASN][1000 genomes]
rs8022878	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs952821	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1382	chr14:84487547-84532237	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84473400-84490600	Weak transcription	Ovary	ovary
2	chr14:84488600-84489400	Enhancers	HUVEC	blood vessel
3	chr14:84488800-84489400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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