Variant report

Variant	rs12590725
Chromosome Location	chr14:84454078-84454079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10131505	0.86[ASN][1000 genomes]
rs10132537	0.86[ASN][1000 genomes]
rs10133221	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10137482	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10139559	0.95[ASN][1000 genomes]
rs10148456	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10151367	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11851518	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12432538	0.91[ASN][1000 genomes]
rs12434360	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12435170	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12436496	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12587047	0.95[ASN][1000 genomes]
rs12587356	0.88[ASN][1000 genomes]
rs12589135	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12590331	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12887780	0.86[ASN][1000 genomes]
rs12887904	0.86[ASN][1000 genomes]
rs17119380	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17119453	0.90[ASN][1000 genomes]
rs1999279	0.86[ASN][1000 genomes]
rs2183523	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2210184	0.83[ASN][1000 genomes]
rs2210185	0.86[ASN][1000 genomes]
rs28793601	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34326388	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4904151	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4904152	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4904153	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59954455	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6574764	0.86[ASN][1000 genomes]
rs71412380	0.86[ASN][1000 genomes]
rs7142351	0.88[ASN][1000 genomes]
rs7148040	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7153137	0.86[ASN][1000 genomes]
rs7155319	0.88[ASN][1000 genomes]
rs72701039	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7493561	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8007316	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8022815	0.85[ASN][1000 genomes]
rs8022878	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs952821	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv974291	chr14:84447572-84460362	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84453000-84455600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr14:84453400-84454600	Weak transcription	Monocytes-CD14+_RO01746	blood

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