Variant report

Variant	rs59954455
Chromosome Location	chr14:84483603-84483604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:84482307..84485229-chr14:84495468..84497989,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10131505	0.80[ASN][1000 genomes]
rs10132537	0.80[ASN][1000 genomes]
rs10133221	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10137482	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10139559	0.87[ASN][1000 genomes]
rs10148456	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10151367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11851518	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12432538	0.85[ASN][1000 genomes]
rs12434360	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12435170	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12436496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12587047	0.87[ASN][1000 genomes]
rs12587356	0.95[ASN][1000 genomes]
rs12589135	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12590331	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12590725	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12887780	0.80[ASN][1000 genomes]
rs12887904	0.80[ASN][1000 genomes]
rs17119380	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17119453	0.93[ASN][1000 genomes]
rs1999279	0.80[ASN][1000 genomes]
rs2183523	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2210185	0.80[ASN][1000 genomes]
rs28793601	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34326388	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4904151	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4904152	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4904153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6574764	0.80[ASN][1000 genomes]
rs71412380	0.80[ASN][1000 genomes]
rs7142351	0.93[ASN][1000 genomes]
rs7148040	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7153137	0.80[ASN][1000 genomes]
rs7155319	0.95[ASN][1000 genomes]
rs72701039	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7493561	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8007316	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022878	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs952821	0.87[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84473400-84490600	Weak transcription	Ovary	ovary
2	chr14:84483600-84483800	Enhancers	Aorta	Aorta
3	chr14:84483600-84484200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:84483600-84484200	Enhancers	Adipose Nuclei	Adipose
5	chr14:84483600-84484400	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links