Variant report

Variant	rs6574764
Chromosome Location	chr14:84445559-84445560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10131505	1.00[ASN][1000 genomes]
rs10132537	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10137482	0.81[ASN][1000 genomes]
rs10139559	0.91[ASN][1000 genomes]
rs10148456	0.81[ASN][1000 genomes]
rs10151367	0.81[ASN][1000 genomes]
rs11851518	0.81[ASN][1000 genomes]
rs12432538	0.95[ASN][1000 genomes]
rs12434360	0.81[ASN][1000 genomes]
rs12435170	0.86[ASN][1000 genomes]
rs12436496	0.80[ASN][1000 genomes]
rs12587047	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12587356	0.85[ASN][1000 genomes]
rs12589135	0.84[ASN][1000 genomes]
rs12590331	0.81[ASN][1000 genomes]
rs12590725	0.86[ASN][1000 genomes]
rs12887780	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12887904	1.00[ASN][1000 genomes]
rs17119380	0.87[ASN][1000 genomes]
rs17119453	0.87[ASN][1000 genomes]
rs1999279	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183523	0.87[ASN][1000 genomes]
rs2210184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2210185	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28793601	0.81[ASN][1000 genomes]
rs34326388	0.87[ASN][1000 genomes]
rs4904151	0.87[ASN][1000 genomes]
rs4904153	0.81[ASN][1000 genomes]
rs59954455	0.80[ASN][1000 genomes]
rs71412380	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142351	0.85[ASN][1000 genomes]
rs7148040	0.81[ASN][1000 genomes]
rs7153137	1.00[ASN][1000 genomes]
rs7155319	0.85[ASN][1000 genomes]
rs7161618	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72701039	0.81[ASN][1000 genomes]
rs7493561	0.81[ASN][1000 genomes]
rs8007316	0.87[ASN][1000 genomes]
rs8022815	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8022878	0.87[ASN][1000 genomes]
rs952821	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84442200-84448000	Weak transcription	Stomach Mucosa	stomach
2	chr14:84443000-84446800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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