Variant report

Variant	rs10153470
Chromosome Location	chr19:28230624-28230625
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 216 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10153502	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1015786	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10401429	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10401615	1.00[ASN][1000 genomes]
rs10401709	0.93[ASN][1000 genomes]
rs10402862	1.00[ASN][1000 genomes]
rs10410682	0.93[ASN][1000 genomes]
rs10413562	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10414194	0.93[ASN][1000 genomes]
rs10414616	0.86[ASN][1000 genomes]
rs10420878	0.86[ASN][1000 genomes]
rs10422399	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10424486	0.93[ASN][1000 genomes]
rs1073625	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11084621	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11084627	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1133899	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1158384	0.86[ASN][1000 genomes]
rs1158385	0.86[ASN][1000 genomes]
rs11667249	0.93[ASN][1000 genomes]
rs11667867	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11669735	0.93[ASN][1000 genomes]
rs11670327	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11670647	0.93[ASN][1000 genomes]
rs11672082	0.93[ASN][1000 genomes]
rs11673578	0.80[ASN][1000 genomes]
rs11673706	0.86[ASN][1000 genomes]
rs11882825	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12460677	0.84[AFR][1000 genomes]
rs12973865	1.00[ASN][1000 genomes]
rs12975852	1.00[ASN][1000 genomes]
rs12986209	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1548801	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1548802	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1594015	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1594016	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1594019	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1594023	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1594024	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1860569	0.86[ASN][1000 genomes]
rs1896747	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1988470	0.93[ASN][1000 genomes]
rs2009234	0.86[ASN][1000 genomes]
rs2052175	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2110048	0.87[ASN][1000 genomes]
rs2110061	0.93[ASN][1000 genomes]
rs2191439	0.93[ASN][1000 genomes]
rs2195421	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2864803	0.93[ASN][1000 genomes]
rs2864804	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2864805	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2864806	0.86[ASN][1000 genomes]
rs28868573	0.93[ASN][1000 genomes]
rs28893295	0.93[ASN][1000 genomes]
rs2894558	0.86[ASN][1000 genomes]
rs34225396	0.86[ASN][1000 genomes]
rs3746157	1.00[ASN][1000 genomes]
rs3898265	1.00[ASN][1000 genomes]
rs4141057	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4239562	0.93[ASN][1000 genomes]
rs4378722	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4386242	0.82[ASN][1000 genomes]
rs4470261	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4474807	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4524055	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4578781	0.86[ASN][1000 genomes]
rs4581827	0.86[ASN][1000 genomes]
rs4588104	0.80[ASN][1000 genomes]
rs4804917	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4805514	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4805536	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4805557	1.00[ASN][1000 genomes]
rs4805593	0.96[ASN][1000 genomes]
rs4805594	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4805609	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4805626	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4805630	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4805638	0.86[ASN][1000 genomes]
rs55640231	0.86[ASN][1000 genomes]
rs55719553	0.93[ASN][1000 genomes]
rs55782427	0.86[ASN][1000 genomes]
rs55873776	0.86[ASN][1000 genomes]
rs56231645	0.93[ASN][1000 genomes]
rs56256043	0.86[ASN][1000 genomes]
rs56286087	0.82[ASN][1000 genomes]
rs58027208	0.86[ASN][1000 genomes]
rs60587773	0.86[ASN][1000 genomes]
rs62108202	0.80[AMR][1000 genomes]
rs6510199	0.86[ASN][1000 genomes]
rs6510235	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6510252	1.00[ASN][1000 genomes]
rs6510262	1.00[ASN][1000 genomes]
rs6510299	0.93[ASN][1000 genomes]
rs6510309	0.80[ASN][1000 genomes]
rs66504041	0.86[ASN][1000 genomes]
rs66508316	0.80[ASN][1000 genomes]
rs66571733	0.86[ASN][1000 genomes]
rs66949121	0.80[ASN][1000 genomes]
rs66976005	0.83[ASN][1000 genomes]
rs67142803	0.86[ASN][1000 genomes]
rs67584419	0.93[ASN][1000 genomes]
rs68032555	0.86[ASN][1000 genomes]
rs68040262	0.80[ASN][1000 genomes]
rs68097239	0.86[ASN][1000 genomes]
rs68181103	0.86[ASN][1000 genomes]
rs7247675	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7248100	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7252282	0.86[ASN][1000 genomes]
rs7254201	0.93[ASN][1000 genomes]
rs7254662	0.86[ASN][1000 genomes]
rs7255059	0.86[ASN][1000 genomes]
rs7257834	0.86[ASN][1000 genomes]
rs7258333	0.85[ASN][1000 genomes]
rs7258406	0.84[ASN][1000 genomes]
rs7258513	0.93[ASN][1000 genomes]
rs7259232	0.86[ASN][1000 genomes]
rs7260096	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73014695	0.86[ASN][1000 genomes]
rs73014698	0.86[ASN][1000 genomes]
rs73016605	0.86[ASN][1000 genomes]
rs73016614	0.86[ASN][1000 genomes]
rs73016684	0.86[ASN][1000 genomes]
rs73018704	0.87[ASN][1000 genomes]
rs73032246	0.86[ASN][1000 genomes]
rs73032263	0.86[ASN][1000 genomes]
rs73523505	0.86[ASN][1000 genomes]
rs73525511	0.86[ASN][1000 genomes]
rs73929112	0.86[ASN][1000 genomes]
rs73931650	0.80[ASN][1000 genomes]
rs739775	0.86[ASN][1000 genomes]
rs739776	0.86[ASN][1000 genomes]
rs741083	1.00[ASN][1000 genomes]
rs757236	0.86[ASN][1000 genomes]
rs758763	0.86[ASN][1000 genomes]
rs759041	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs759042	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs759044	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs765381	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8102289	1.00[ASN][1000 genomes]
rs8103902	0.86[ASN][1000 genomes]
rs8104340	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8107879	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8108442	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8108903	0.86[ASN][1000 genomes]
rs8111829	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8112464	0.86[ASN][1000 genomes]
rs8189853	0.80[ASN][1000 genomes]
rs8190019	0.86[ASN][1000 genomes]
rs9304835	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9749608	0.86[ASN][1000 genomes]
rs9789282	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv1060017	chr19:27747981-28249070	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1060889	chr19:27747981-28256350	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1066699	chr19:27747981-28273601	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1060674	chr19:27747981-28299996	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1065481	chr19:27747981-28413175	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1059366	chr19:27747981-28414634	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1058373	chr19:27747981-28491356	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1061090	chr19:27747981-28682929	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
10	nsv911509	chr19:27763440-28269366	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv911510	chr19:27763440-28330908	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv911511	chr19:27763440-28468209	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv911512	chr19:27763440-28484676	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
14	nsv911513	chr19:27763440-28491875	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv911514	chr19:27763440-28496053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv579127	chr19:27778828-28274509	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv911523	chr19:27794208-28468209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv911524	chr19:27794208-28484676	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
19	nsv911525	chr19:27794208-28491875	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
20	nsv911526	chr19:27794208-28496053	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
21	esv1807139	chr19:27801814-28231750	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv1063232	chr19:27853206-28569858	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
23	nsv543972	chr19:27853206-28569858	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
24	nsv1055749	chr19:27853206-28740895	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
25	nsv543973	chr19:27853206-28740895	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
26	nsv1067798	chr19:27853207-28431843	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
27	nsv498156	chr19:27853207-28431843	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
28	nsv868982	chr19:27853207-28483508	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
29	nsv930989	chr19:27853207-28569857	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
30	nsv532819	chr19:27853207-28664723	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
31	nsv530474	chr19:27853207-28740894	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
32	nsv916250	chr19:27853209-28483527	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
33	nsv911535	chr19:27861995-28491875	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
34	nsv911536	chr19:27861995-28496053	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
35	esv2762966	chr19:27881186-28539281	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
36	nsv911542	chr19:27893661-28269366	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
37	nsv911543	chr19:27893661-28496053	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
38	nsv1056594	chr19:27919584-28249024	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
39	nsv1062168	chr19:27919584-28460526	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
40	nsv543976	chr19:27919584-28460526	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
41	nsv1058421	chr19:27919584-28491356	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
42	nsv543977	chr19:27919584-28491356	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
43	nsv1061318	chr19:27919584-28509647	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
44	nsv543978	chr19:27919584-28509647	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
45	nsv1060373	chr19:27919584-28530216	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
46	nsv1055340	chr19:27919584-28755810	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
47	nsv1063211	chr19:27919584-28777862	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
48	nsv543979	chr19:27919584-28777862	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
49	nsv1059604	chr19:27919584-28814901	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
50	nsv1064493	chr19:27919584-28837984	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10153470	LINC00662	cis	Whole Blood	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:28216000-28235800	Weak transcription	HSMM	muscle
2	chr19:28217000-28237600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:28218600-28235600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr19:28220200-28238000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:28220200-28238000	Weak transcription	HMEC	breast
6	chr19:28220600-28231000	Weak transcription	Right Ventricle	heart
7	chr19:28220800-28237800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr19:28223400-28236200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr19:28223400-28237000	Weak transcription	Brain Angular Gyrus	brain
10	chr19:28223600-28238200	ZNF genes & repeats	Brain Germinal Matrix	brain
11	chr19:28223600-28238800	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:28223800-28237800	Weak transcription	Primary B cells from cord blood	blood
13	chr19:28224200-28231200	Strong transcription	Ovary	ovary
14	chr19:28224200-28232800	Weak transcription	Colon Smooth Muscle	Colon
15	chr19:28224200-28233000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr19:28224200-28235800	Strong transcription	Stomach Smooth Muscle	stomach
17	chr19:28224200-28238200	ZNF genes & repeats	Aorta	Aorta
18	chr19:28224600-28234400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr19:28225200-28232600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr19:28225200-28238000	Weak transcription	Liver	Liver
21	chr19:28225400-28231000	Weak transcription	Psoas Muscle	Psoas
22	chr19:28225400-28233000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr19:28225400-28237000	Weak transcription	Brain Substantia Nigra	brain
24	chr19:28225600-28230800	Weak transcription	Fetal Heart	heart
25	chr19:28225800-28233200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:28227200-28231000	Weak transcription	HSMMtube	muscle
27	chr19:28227600-28233400	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr19:28227800-28233200	Strong transcription	Adipose Nuclei	Adipose
29	chr19:28227800-28237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr19:28227800-28241200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr19:28228200-28237800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr19:28228400-28231400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr19:28228800-28232000	ZNF genes & repeats	Fetal Stomach	stomach
34	chr19:28228800-28237800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr19:28229400-28230800	Strong transcription	Brain Hippocampus Middle	brain
36	chr19:28229400-28238000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr19:28229600-28232200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
38	chr19:28229800-28231000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr19:28230000-28230800	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
40	chr19:28230000-28230800	Strong transcription	A549	lung
41	chr19:28230000-28231400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr19:28230000-28232200	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr19:28230200-28231400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr19:28230200-28231800	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr19:28230200-28232000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr19:28230400-28231000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr19:28230400-28232000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr19:28230400-28232400	Genic enhancers	Left Ventricle	heart
49	chr19:28230600-28237400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links