Variant report

Variant	rs10158226
Chromosome Location	chr1:86760937-86760938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10873771	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10873772	0.95[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs10873778	0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes]
rs11161803	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11161804	0.81[ASN][1000 genomes]
rs12031536	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12036110	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1407719	0.95[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap]
rs1413427	0.95[CHB][hapmap]
rs1413429	0.95[CHB][hapmap]
rs16908	0.95[LWK][hapmap];0.86[MEX][hapmap];0.82[YRI][hapmap]
rs17372196	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1830675	0.81[ASN][1000 genomes]
rs1999600	0.95[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.82[AMR][1000 genomes]
rs2273941	0.95[CHB][hapmap]
rs2275000	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2390097	0.95[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap]
rs28782251	0.82[AMR][1000 genomes]
rs2892924	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3737159	0.95[CHB][hapmap]
rs3945233	0.95[CHB][hapmap]
rs4656026	0.81[ASN][1000 genomes]
rs4656044	0.95[CHB][hapmap]
rs6703576	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7415758	0.95[CHB][hapmap]
rs7515651	0.91[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.81[ASN][1000 genomes]
rs7553685	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs956499	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871223	chr1:86724523-86784804	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86755600-86761600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:86757000-86762000	Weak transcription	Fetal Stomach	stomach

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