Variant report

Variant	rs12036110
Chromosome Location	chr1:86802813-86802814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10158226	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10782571	0.81[ASN][1000 genomes]
rs10873771	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10873772	0.85[ASN][1000 genomes]
rs10873773	0.81[ASN][1000 genomes]
rs10873775	0.81[ASN][1000 genomes]
rs10873776	0.81[ASN][1000 genomes]
rs10873778	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11161803	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11161804	0.85[ASN][1000 genomes]
rs11161805	0.81[ASN][1000 genomes]
rs11161807	0.81[ASN][1000 genomes]
rs11810689	0.81[ASN][1000 genomes]
rs12031536	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1407719	0.81[ASN][1000 genomes]
rs1407720	0.81[ASN][1000 genomes]
rs17372196	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1830675	0.86[ASN][1000 genomes]
rs1999600	0.87[AMR][1000 genomes]
rs2031136	0.81[ASN][1000 genomes]
rs2181418	0.80[ASN][1000 genomes]
rs2273941	0.80[ASN][1000 genomes]
rs2275000	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2390096	0.81[ASN][1000 genomes]
rs2390097	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2390099	0.81[ASN][1000 genomes]
rs28782251	0.87[AMR][1000 genomes]
rs2892924	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656026	0.85[ASN][1000 genomes]
rs4656044	0.81[ASN][1000 genomes]
rs58200516	0.81[ASN][1000 genomes]
rs6703576	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs67799288	0.81[ASN][1000 genomes]
rs7515651	0.85[ASN][1000 genomes]
rs7541004	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12036110	ODF2L	cis	Nerve Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86791400-86804600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr1:86802200-86805000	Enhancers	Primary neutrophils fromperipheralblood	blood

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