The 2.0 version of rSNPBase

Variant report

Variant rs2390099
Chromosome Location chr1:86842675-86842676
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86808600-86842800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:86815200-86860200 Weak transcription Fetal Brain Male brain
3 chr1:86817200-86843800 Weak transcription Small Intestine intestine
4 chr1:86817600-86843000 Weak transcription Brain Cingulate Gyrus brain
5 chr1:86818000-86843200 Weak transcription Pancreas Pancrea
6 chr1:86818000-86851600 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:86819800-86843000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr1:86819800-86843000 Weak transcription Fetal Muscle Trunk muscle
9 chr1:86820200-86843400 Weak transcription Left Ventricle heart
10 chr1:86820200-86854400 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr1:86820200-86854800 Weak transcription HSMMtube muscle
12 chr1:86820400-86842800 Weak transcription Fetal Muscle Leg muscle
13 chr1:86820400-86842800 Weak transcription Placenta Placenta
14 chr1:86820400-86845400 Weak transcription Hela-S3 cervix
15 chr1:86820400-86846200 Weak transcription NHLF lung
16 chr1:86820400-86846400 Weak transcription Muscle Satellite Cultured Cells --
17 chr1:86820400-86847000 Weak transcription Liver Liver
18 chr1:86820400-86848000 Weak transcription Stomach Smooth Muscle stomach
19 chr1:86820400-86860200 Weak transcription NHEK skin
20 chr1:86820600-86842800 Weak transcription Brain Substantia Nigra brain
21 chr1:86820600-86843000 Weak transcription Duodenum Mucosa Duodenum
22 chr1:86820600-86848000 Weak transcription Primary T helper naive cells fromperipheralblood blood
23 chr1:86822400-86846200 Weak transcription Gastric stomach
24 chr1:86823000-86843000 Weak transcription Ovary ovary
25 chr1:86824000-86843000 Weak transcription Brain Hippocampus Middle brain
26 chr1:86824000-86848200 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:86825600-86842800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr1:86826400-86842800 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr1:86828800-86842800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr1:86828800-86842800 Weak transcription Fetal Stomach stomach
31 chr1:86829200-86842800 Weak transcription Fetal Brain Female brain
32 chr1:86836400-86842800 Weak transcription H1 Cell Line embryonic stem cell
33 chr1:86836600-86860800 Weak transcription Aorta Aorta
34 chr1:86837200-86842800 Weak transcription H9 Cell Line embryonic stem cell
35 chr1:86838200-86842800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:86838200-86843600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:86838200-86845800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:86838400-86843000 Strong transcription Primary T regulatory cells fromperipheralblood blood
39 chr1:86838600-86842800 Strong transcription Fetal Thymus thymus
40 chr1:86838600-86843000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:86838800-86842800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:86839200-86842800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr1:86839800-86842800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:86839800-86842800 Weak transcription Thymus Thymus
45 chr1:86839800-86846800 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:86839800-86848200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr1:86840000-86842800 Strong transcription HUES64 Cell Line embryonic stem cell
48 chr1:86840200-86843400 Strong transcription Primary T helper cells fromperipheralblood blood
49 chr1:86840400-86843800 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr1:86840600-86842800 Weak transcription Brain Angular Gyrus brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015