The 2.0 version of rSNPBase

Variant report

Variant rs4534352
Chromosome Location chr1:86860792-86860793
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86836600-86860800 Weak transcription Aorta Aorta
2 chr1:86843400-86860800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr1:86843600-86860800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr1:86844800-86861000 Weak transcription Fetal Intestine Small intestine
5 chr1:86845000-86860800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:86848800-86861000 Weak transcription Primary B cells from cord blood blood
7 chr1:86849200-86860800 Weak transcription Primary hematopoietic stem cells blood
8 chr1:86855600-86860800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr1:86855600-86860800 Weak transcription Brain Cingulate Gyrus brain
10 chr1:86855800-86860800 Weak transcription Primary B cells from peripheral blood blood
11 chr1:86855800-86861000 Weak transcription H9 Cell Line embryonic stem cell
12 chr1:86857200-86861000 Enhancers Primary T helper 17 cells PMA-I stimulated --
13 chr1:86858400-86860800 Enhancers Primary T helper cells fromperipheralblood blood
14 chr1:86858600-86860800 Enhancers Primary T cells from cord blood blood
15 chr1:86858600-86860800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
16 chr1:86858600-86860800 Enhancers Primary T helper cells PMA-I stimulated --
17 chr1:86858800-86860800 Enhancers Primary T helper naive cells from peripheral blood blood
18 chr1:86858800-86860800 Enhancers Primary T regulatory cells fromperipheralblood blood
19 chr1:86858800-86860800 Enhancers Primary T killer memory cells from peripheral blood blood
20 chr1:86858800-86860800 Enhancers Adipose Nuclei Adipose
21 chr1:86858800-86861000 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr1:86859000-86861200 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:86859200-86860800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:86859200-86860800 Enhancers Brain Germinal Matrix brain
25 chr1:86859200-86860800 Weak transcription Colon Smooth Muscle Colon
26 chr1:86859200-86861000 Enhancers Fetal Stomach stomach
27 chr1:86859400-86860800 Weak transcription Brain Anterior Caudate brain
28 chr1:86859400-86861400 Flanking Active TSS Muscle Satellite Cultured Cells --
29 chr1:86859600-86860800 Weak transcription Brain Hippocampus Middle brain
30 chr1:86859600-86860800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
31 chr1:86859600-86860800 Enhancers Fetal Brain Female brain
32 chr1:86859600-86860800 Active TSS Rectal Mucosa Donor 29 rectum
33 chr1:86859600-86860800 Active TSS Hela-S3 cervix
34 chr1:86859600-86861000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:86859600-86861000 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:86859600-86862800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:86859800-86860800 Weak transcription Brain Angular Gyrus brain
38 chr1:86859800-86860800 Weak transcription Fetal Heart heart
39 chr1:86859800-86860800 Weak transcription Fetal Kidney kidney
40 chr1:86859800-86860800 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr1:86859800-86861000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr1:86859800-86862200 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:86859800-86862400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:86859800-86862800 Active TSS Pancreatic Islets Pancreatic Islet
45 chr1:86860000-86860800 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr1:86860000-86860800 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:86860000-86860800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:86860000-86860800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:86860000-86860800 Active TSS Osteobl bone
50 chr1:86860000-86861000 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015