Variant report

Variant	rs3765986
Chromosome Location	chr1:86914172-86914173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:86905357..86907939-chr1:86912947..86914769,2	K562	blood:

Variant related genes	Relation type
ENSG00000137975	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10873772	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs10873778	0.87[CEU][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1116108	0.87[CEU][hapmap]
rs1116109	0.82[ASN][1000 genomes]
rs11161811	0.84[ASN][1000 genomes]
rs11799437	0.91[CEU][hapmap]
rs11802019	0.84[CEU][hapmap]
rs12033867	0.81[ASN][1000 genomes]
rs12072655	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1407719	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs1413427	0.92[CEU][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1413429	0.88[CEU][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs16908	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17372196	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs1999600	0.87[CEU][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2093612	0.81[ASN][1000 genomes]
rs2210641	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2273941	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs2275001	0.92[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2390057	0.91[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap]
rs2390097	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs3737159	0.92[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3737672	0.87[CEU][hapmap]
rs3945233	0.92[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4534352	0.80[ASN][1000 genomes]
rs4656044	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs6674140	0.80[ASN][1000 genomes]
rs7415758	0.91[CEU][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7515651	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs7553685	0.82[CEU][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs956499	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9659676	0.82[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs969786	0.85[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86896600-86914400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:86897200-86922600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:86897200-86922800	Strong transcription	HMEC	breast
4	chr1:86897400-86916000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:86903400-86926800	Weak transcription	Esophagus	oesophagus
6	chr1:86910600-86914400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:86912400-86914800	Strong transcription	NHEK	skin
8	chr1:86912800-86914600	Enhancers	Brain Anterior Caudate	brain
9	chr1:86913200-86914600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:86913200-86915600	Enhancers	K562	blood
11	chr1:86913400-86914200	Flanking Active TSS	Brain Angular Gyrus	brain
12	chr1:86913400-86914200	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr1:86913400-86914200	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr1:86913800-86914600	Enhancers	Brain Cingulate Gyrus	brain
15	chr1:86914000-86915600	Enhancers	Brain Substantia Nigra	brain

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