The 2.0 version of rSNPBase

Variant report

Variant rs2390097
Chromosome Location chr1:86843576-86843577
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86815200-86860200 Weak transcription Fetal Brain Male brain
2 chr1:86817200-86843800 Weak transcription Small Intestine intestine
3 chr1:86818000-86851600 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:86820200-86854400 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr1:86820200-86854800 Weak transcription HSMMtube muscle
6 chr1:86820400-86845400 Weak transcription Hela-S3 cervix
7 chr1:86820400-86846200 Weak transcription NHLF lung
8 chr1:86820400-86846400 Weak transcription Muscle Satellite Cultured Cells --
9 chr1:86820400-86847000 Weak transcription Liver Liver
10 chr1:86820400-86848000 Weak transcription Stomach Smooth Muscle stomach
11 chr1:86820400-86860200 Weak transcription NHEK skin
12 chr1:86820600-86848000 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:86822400-86846200 Weak transcription Gastric stomach
14 chr1:86824000-86848200 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr1:86836600-86860800 Weak transcription Aorta Aorta
16 chr1:86838200-86843600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:86838200-86845800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:86839800-86846800 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:86839800-86848200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr1:86840400-86843800 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr1:86840600-86848200 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:86840600-86859600 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:86840800-86848600 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:86841000-86849000 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr1:86841000-86849400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr1:86841000-86851400 Weak transcription HMEC breast
27 chr1:86841000-86854400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr1:86841000-86859800 Weak transcription HSMM muscle
29 chr1:86841600-86845800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr1:86841600-86859800 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:86841800-86855000 Weak transcription Primary T cells fromperipheralblood blood
32 chr1:86842000-86843600 Weak transcription Osteobl bone
33 chr1:86842000-86844000 Weak transcription NH-A brain
34 chr1:86842000-86845000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:86842000-86845000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:86842000-86846200 Weak transcription NHDF-Ad bronchial
37 chr1:86842200-86844400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:86842200-86845000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:86842200-86847000 Weak transcription HUVEC blood vessel
40 chr1:86842400-86843600 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
41 chr1:86842400-86843600 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
42 chr1:86842400-86843800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
43 chr1:86842400-86843800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr1:86842400-86844400 ZNF genes & repeats hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr1:86842400-86844400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
46 chr1:86842400-86844400 ZNF genes & repeats Primary B cells from cord blood blood
47 chr1:86842400-86845000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:86842400-86848200 Weak transcription Colon Smooth Muscle Colon
49 chr1:86842600-86843600 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
50 chr1:86842600-86843600 ZNF genes & repeats Fetal Intestine Small intestine

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Last update: Aug 31, 2015