The 2.0 version of rSNPBase

Variant report

Variant rs10782571
Chromosome Location chr1:86858602-86858603
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86815200-86860200 Weak transcription Fetal Brain Male brain
2 chr1:86820400-86860200 Weak transcription NHEK skin
3 chr1:86836600-86860800 Weak transcription Aorta Aorta
4 chr1:86840600-86859600 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:86841000-86859800 Weak transcription HSMM muscle
6 chr1:86841600-86859800 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:86843400-86860800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:86843600-86859200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:86843600-86860600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:86843600-86860800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:86844800-86859200 Weak transcription Brain Germinal Matrix brain
12 chr1:86844800-86861000 Weak transcription Fetal Intestine Small intestine
13 chr1:86845000-86859200 Weak transcription NH-A brain
14 chr1:86845000-86859400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:86845000-86860200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr1:86845000-86860600 Weak transcription Fetal Thymus thymus
17 chr1:86845000-86860800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr1:86845200-86859400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:86846600-86860400 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:86848800-86861000 Weak transcription Primary B cells from cord blood blood
21 chr1:86849200-86860200 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr1:86849200-86860800 Weak transcription Primary hematopoietic stem cells blood
23 chr1:86851800-86859800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:86852400-86860600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:86855200-86859200 Weak transcription Osteobl bone
26 chr1:86855600-86858800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:86855600-86858800 Weak transcription Adipose Nuclei Adipose
28 chr1:86855600-86858800 Weak transcription GM12878-XiMat blood
29 chr1:86855600-86859000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:86855600-86859600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:86855600-86860200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:86855600-86860800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
33 chr1:86855600-86860800 Weak transcription Brain Cingulate Gyrus brain
34 chr1:86855800-86858800 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr1:86855800-86859600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:86855800-86860800 Weak transcription Primary B cells from peripheral blood blood
37 chr1:86855800-86861000 Weak transcription H9 Cell Line embryonic stem cell
38 chr1:86856200-86860600 Weak transcription Primary T cells fromperipheralblood blood
39 chr1:86856600-86858800 Weak transcription Placenta Amnion Placenta Amnion
40 chr1:86856600-86859600 Weak transcription Thymus Thymus
41 chr1:86857000-86858800 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr1:86857200-86858800 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr1:86857200-86858800 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:86857200-86858800 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr1:86857200-86861000 Enhancers Primary T helper 17 cells PMA-I stimulated --
46 chr1:86857400-86859200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:86857800-86860200 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr1:86858200-86859600 Enhancers Dnd41 blood
49 chr1:86858400-86860800 Enhancers Primary T helper cells fromperipheralblood blood
50 chr1:86858600-86858800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015