Variant report

Variant	rs10158424
Chromosome Location	chr1:217084078-217084079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1025652	0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025653	0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025654	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11117719	0.81[EUR][1000 genomes]
rs11117722	0.92[EUR][1000 genomes]
rs4348786	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681527	0.91[EUR][1000 genomes]
rs6688971	0.92[EUR][1000 genomes]
rs7519967	0.92[EUR][1000 genomes]
rs7524372	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217078600-217088000	Weak transcription	Right Atrium	heart
3	chr1:217079000-217086400	Weak transcription	Fetal Heart	heart
4	chr1:217082000-217095000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:217082600-217084200	Enhancers	HMEC	breast
6	chr1:217082800-217084400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:217083000-217085000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:217083200-217084200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr1:217083200-217085000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:217083200-217088000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:217083800-217084200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:217083800-217085400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:217084000-217084800	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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