Variant report

Variant	rs11117719
Chromosome Location	chr1:217071971-217071972
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10158424	0.81[EUR][1000 genomes]
rs1025652	0.84[EUR][1000 genomes]
rs1025653	0.84[EUR][1000 genomes]
rs11117722	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4348786	0.83[EUR][1000 genomes]
rs6681527	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688971	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7519967	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7524372	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062600-217078000	Weak transcription	Pancreas	Pancrea
2	chr1:217062800-217076000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:217062800-217076200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:217066200-217072200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:217067400-217075800	Weak transcription	Fetal Intestine Large	intestine
7	chr1:217067600-217072200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:217067800-217076000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:217068200-217076000	Weak transcription	Left Ventricle	heart
10	chr1:217070400-217072000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:217071400-217073400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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