Variant report

Variant	rs1025652
Chromosome Location	chr1:217082139-217082140
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10158424	0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025653	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025654	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11117719	0.84[EUR][1000 genomes]
rs11117722	1.00[CEU][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs1898312	0.85[YRI][hapmap]
rs4348786	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681527	0.94[EUR][1000 genomes]
rs6688971	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs7519967	0.95[EUR][1000 genomes]
rs7524372	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217072200-217082800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:217076800-217083600	Weak transcription	Brain Anterior Caudate	brain
4	chr1:217077000-217082400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:217078600-217088000	Weak transcription	Right Atrium	heart
6	chr1:217079000-217086400	Weak transcription	Fetal Heart	heart
7	chr1:217080000-217082600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:217080000-217082600	Weak transcription	HMEC	breast
9	chr1:217082000-217095000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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