Variant report

Variant	rs10158611
Chromosome Location	chr1:172917599-172917600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172909514..172913371-chr1:172916147..172919223,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10157326	1.00[AMR][1000 genomes]
rs10158243	0.83[AFR][1000 genomes]
rs12239220	0.94[AFR][1000 genomes]
rs13373767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172911200-172917600	Weak transcription	Fetal Lung	lung
2	chr1:172913600-172919200	Enhancers	HUVEC	blood vessel
3	chr1:172914600-172917800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:172915000-172918000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:172915200-172924600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:172915400-172918600	Enhancers	Dnd41	blood
7	chr1:172915800-172918800	Enhancers	NHDF-Ad	bronchial
8	chr1:172916000-172918600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:172916000-172918600	Enhancers	NH-A	brain
10	chr1:172916000-172918800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:172916000-172918800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172916200-172918200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:172916200-172918800	Enhancers	HSMM	muscle
14	chr1:172916200-172919000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:172916400-172918400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:172916600-172917600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:172916800-172918000	Enhancers	HSMMtube	muscle
18	chr1:172916800-172918400	Enhancers	NHLF	lung
19	chr1:172916800-172918400	Enhancers	Osteobl	bone
20	chr1:172917000-172917800	Enhancers	Fetal Stomach	stomach
21	chr1:172917000-172921800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:172917200-172917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:172917200-172918400	Enhancers	HMEC	breast
24	chr1:172917200-172918400	Enhancers	NHEK	skin
25	chr1:172917400-172918200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:172917400-172918400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:172917400-172918800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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