Variant report

Variant	rs10159558
Chromosome Location	chr10:43683227-43683228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43682668..43685704-chr10:43685961..43688550,3	MCF-7	breast:
2	chr10:43682496..43684417-chr10:43696461..43698091,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11238441	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11238465	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258585	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12260994	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12262152	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765436	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12765715	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12765838	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12766298	0.93[ASN][1000 genomes]
rs12775330	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12775743	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12779732	0.93[ASN][1000 genomes]
rs17363630	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799939	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1800863	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1864393	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075911	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28401552	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900627	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3026776	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3026779	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3026781	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3026782	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34817887	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4987091	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66557659	0.80[AMR][1000 genomes]
rs7074319	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086299	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092548	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096367	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71505665	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71505667	0.93[ASN][1000 genomes]
rs71505668	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72783237	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72783242	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7893332	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903283	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910648	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910805	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921281	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7923256	0.81[AMR][1000 genomes]
rs9804209	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv1831010	chr10:43674916-43759185	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43635600-43689000	Weak transcription	Esophagus	oesophagus
2	chr10:43652600-43697200	Weak transcription	Pancreas	Pancrea
3	chr10:43658800-43690600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:43660400-43687400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:43662200-43684400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:43662200-43697600	Weak transcription	NHEK	skin
7	chr10:43662600-43690000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:43663600-43683800	Strong transcription	Fetal Thymus	thymus
9	chr10:43667800-43685200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:43667800-43692800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:43668000-43685200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:43668200-43694000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:43668600-43683800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:43668600-43683800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:43668800-43684400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:43669000-43684200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:43669600-43689400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:43671000-43689800	Weak transcription	Gastric	stomach
19	chr10:43672200-43690600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:43673400-43684000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:43673600-43686400	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:43673800-43684800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:43673800-43685000	Weak transcription	GM12878-XiMat	blood
24	chr10:43673800-43686400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:43674000-43690600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:43674400-43684400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:43674400-43697800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:43675600-43700600	Weak transcription	A549	lung
29	chr10:43675800-43683800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:43675800-43697000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:43676200-43683800	Strong transcription	Fetal Lung	lung
32	chr10:43676600-43690600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:43676800-43685800	Weak transcription	HUVEC	blood vessel
34	chr10:43677000-43683400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:43677200-43692200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:43677400-43687400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:43678400-43684000	Strong transcription	Osteobl	bone
38	chr10:43678600-43684600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:43678800-43696800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:43679400-43684000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:43679400-43687400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:43679400-43687400	Weak transcription	Fetal Stomach	stomach
43	chr10:43679400-43687400	Weak transcription	NHLF	lung
44	chr10:43679400-43688000	Weak transcription	Spleen	Spleen
45	chr10:43679400-43688200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:43679400-43689800	Weak transcription	Lung	lung
47	chr10:43679400-43690400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:43679400-43692000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:43679400-43692200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:43679400-43693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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