Variant report

Variant	rs3026782
Chromosome Location	chr10:43624105-43624106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43623236..43626129-chr10:43750680..43753451,2	K562	blood:
2	chr10:43623070..43625100-chr10:43630988..43633446,2	MCF-7	breast:
3	chr10:43623719..43626484-chr10:43632512..43634776,3	K562	blood:
4	chr10:43616246..43618061-chr10:43622272..43624625,2	K562	blood:

Variant related genes	Relation type
ENSG00000169826	Chromatin interaction
ENSG00000273008	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10159558	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11238441	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238465	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12258585	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260994	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12262152	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12765436	0.82[ASN][1000 genomes]
rs12765715	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765838	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12766298	0.82[ASN][1000 genomes]
rs12775330	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12775743	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12779732	0.82[ASN][1000 genomes]
rs17363630	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1799939	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1800863	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1864393	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1879299	0.80[AMR][1000 genomes]
rs2075911	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28401552	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2900627	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3026776	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026779	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026781	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34817887	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4987091	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7074319	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7086299	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7092548	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7096367	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71505665	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71505667	0.82[ASN][1000 genomes]
rs71505668	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72783237	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72783242	0.82[ASN][1000 genomes]
rs7893332	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7903283	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7910648	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7910805	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7921281	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923256	0.86[AMR][1000 genomes]
rs9804209	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1038102	chr10:43441601-43642908	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1051701	chr10:43555542-43642895	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046892	chr10:43609488-43636278	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43601400-43632800	Weak transcription	Gastric	stomach
2	chr10:43601600-43624800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:43606400-43632600	Weak transcription	Right Atrium	heart
4	chr10:43606600-43626000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:43609800-43626800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:43614800-43626800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:43617200-43624600	Weak transcription	Fetal Lung	lung
8	chr10:43617200-43632000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:43617400-43632200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:43617600-43624400	Weak transcription	Fetal Thymus	thymus
11	chr10:43618000-43632600	Weak transcription	Spleen	Spleen
12	chr10:43619600-43625800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:43621600-43625400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:43621800-43629800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:43622000-43624400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:43622000-43624600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:43622000-43624600	Enhancers	GM12878-XiMat	blood
18	chr10:43622000-43626400	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:43622200-43624400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:43622600-43624400	Enhancers	HSMMtube	muscle
21	chr10:43622600-43624600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:43622600-43624600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:43622600-43626400	Enhancers	NHDF-Ad	bronchial
24	chr10:43622800-43624400	Weak transcription	Colonic Mucosa	Colon
25	chr10:43622800-43624400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:43622800-43624400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:43622800-43632600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:43623000-43624400	Weak transcription	Placenta	Placenta
29	chr10:43623200-43624200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:43623200-43626000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:43623400-43632600	Weak transcription	Primary B cells from cord blood	blood
32	chr10:43623600-43624400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:43623600-43625400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:43623600-43625600	Enhancers	HSMM	muscle
35	chr10:43623800-43624200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:43623800-43624400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:43623800-43625000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:43623800-43625200	Enhancers	Primary B cells from peripheral blood	blood
39	chr10:43623800-43625600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:43623800-43625600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr10:43624000-43626200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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