Variant report

Variant	rs10159610
Chromosome Location	chr10:91388599-91388600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91387406..91390102-chr10:91401656..91405872,6	MCF-7	breast:
2	chr10:91385865..91388644-chr10:91465383..91467625,2	K562	blood:
3	chr10:91388415..91393520-chr10:91403562..91406264,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction

rs_ID	r²[population]
rs11598411	0.89[CEU][hapmap]
rs12569886	0.89[CEU][hapmap]
rs12573024	0.92[CEU][hapmap]
rs12573060	0.92[CEU][hapmap]
rs1409355	0.89[CEU][hapmap]
rs1555881	0.88[CEU][hapmap]
rs1555882	0.89[CEU][hapmap]
rs2038920	0.89[CEU][hapmap]
rs2420640	0.92[CEU][hapmap]
rs3740034	0.80[ASN][1000 genomes]
rs4934493	0.92[CEU][hapmap]
rs7076351	0.88[CEU][hapmap]
rs7089645	0.89[CEU][hapmap]
rs7098988	0.96[CEU][hapmap]
rs749607	0.89[CEU][hapmap]
rs7905382	0.89[CEU][hapmap]
rs927907	0.81[ASN][1000 genomes]
rs943127	0.89[CEU][hapmap]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
2	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
3	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
4	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91359400-91393000	Weak transcription	NHEK	skin
6	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:91371400-91389400	Weak transcription	A549	lung
10	chr10:91371800-91389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
14	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
16	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:91381600-91390600	Weak transcription	Fetal Stomach	stomach
18	chr10:91381800-91392000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:91383200-91389800	Enhancers	Fetal Heart	heart
20	chr10:91383800-91392800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:91383800-91392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:91383800-91393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:91384000-91394600	Weak transcription	Dnd41	blood
25	chr10:91384400-91393600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:91384800-91392600	Weak transcription	Psoas Muscle	Psoas
27	chr10:91385000-91393600	Weak transcription	Left Ventricle	heart
28	chr10:91385000-91393800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:91385200-91391000	Weak transcription	Fetal Intestine Small	intestine
31	chr10:91385400-91388600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:91385400-91389400	Weak transcription	HepG2	liver
33	chr10:91385400-91391800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:91385400-91393000	Weak transcription	HSMM	muscle
35	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:91385800-91389400	Enhancers	Liver	Liver
38	chr10:91385800-91395600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
40	chr10:91386000-91388600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:91386000-91389600	Weak transcription	Fetal Kidney	kidney
42	chr10:91386000-91390600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:91386000-91393000	Weak transcription	GM12878-XiMat	blood
44	chr10:91386000-91393000	Weak transcription	Osteobl	bone
45	chr10:91386000-91393600	Weak transcription	Right Ventricle	heart
46	chr10:91386000-91394000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:91386000-91402800	Weak transcription	NH-A	brain
48	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
49	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain

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