Variant report

Variant	rs12569886
Chromosome Location	chr10:91458385-91458386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:91457803-91458389	HepG2	liver:	n/a	chr10:91457951-91457962

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91403635..91406711-chr10:91457604..91462894,9	MCF-7	breast:
2	chr10:91456843..91459023-chr10:91459701..91462366,3	MCF-7	breast:

Variant related genes	Relation type
KIF20B	TF binding region
ENSG00000240996	TF binding region
ENSG00000232936	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10159610	0.89[CEU][hapmap]
rs10430645	0.80[JPT][hapmap]
rs10430646	0.81[JPT][hapmap]
rs10509579	0.80[JPT][hapmap]
rs1062465	0.80[JPT][hapmap]
rs10785896	0.81[JPT][hapmap]
rs10881618	0.80[JPT][hapmap]
rs10881619	0.81[JPT][hapmap]
rs10881628	0.81[JPT][hapmap]
rs10881631	0.82[JPT][hapmap]
rs10881645	0.81[JPT][hapmap]
rs10881647	0.80[JPT][hapmap]
rs10881664	0.81[JPT][hapmap]
rs10881666	0.89[JPT][hapmap]
rs11185841	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185861	0.81[JPT][hapmap]
rs11185880	0.82[JPT][hapmap]
rs11598411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571525	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409358	0.80[JPT][hapmap]
rs1555868	0.81[JPT][hapmap]
rs1555881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886997	0.80[JPT][hapmap]
rs2026550	0.81[JPT][hapmap]
rs2038920	1.00[CEU][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182396	0.81[JPT][hapmap]
rs2420640	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740037	0.80[JPT][hapmap]
rs3824609	0.80[JPT][hapmap]
rs4934493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56189305	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6586218	0.81[JPT][hapmap]
rs7076259	0.80[JPT][hapmap]
rs7076351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077349	0.81[JPT][hapmap]
rs7081362	0.81[JPT][hapmap]
rs7085805	0.81[JPT][hapmap]
rs7087240	0.81[JPT][hapmap]
rs7088104	0.81[JPT][hapmap]
rs7089150	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7089473	0.81[JPT][hapmap]
rs7089645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092444	0.80[JPT][hapmap]
rs7095818	0.80[JPT][hapmap]
rs7096466	0.80[JPT][hapmap]
rs7097496	0.82[JPT][hapmap]
rs7098988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100603	0.80[JPT][hapmap]
rs716781	0.81[JPT][hapmap]
rs745215	0.87[EUR][1000 genomes]
rs749607	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895379	0.80[JPT][hapmap]
rs7898670	0.81[JPT][hapmap]
rs7905382	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910615	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911443	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7912464	0.81[JPT][hapmap]
rs7912591	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181361	0.82[JPT][hapmap]
rs9325443	0.80[JPT][hapmap]
rs943127	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs962524	0.80[JPT][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91444600-91460800	Weak transcription	Left Ventricle	heart
2	chr10:91445200-91460600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:91447200-91459800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:91453000-91460600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:91453400-91459400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:91453800-91460800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:91455000-91460400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:91455400-91460600	Weak transcription	Psoas Muscle	Psoas
9	chr10:91456000-91459400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:91456000-91459400	Weak transcription	NHEK	skin
11	chr10:91456000-91459600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:91456000-91459800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:91456000-91459800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:91456000-91460800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:91456200-91459200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:91456200-91460200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:91456200-91460200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:91456200-91460200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:91456200-91460400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:91456200-91460800	Weak transcription	Ovary	ovary
21	chr10:91456600-91459400	Enhancers	HepG2	liver
22	chr10:91457000-91460600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:91457200-91460600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:91457200-91460800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:91457200-91460800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:91457400-91459800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:91457400-91460800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:91458000-91459400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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