Variant report

Variant	rs4934493
Chromosome Location	chr10:91444129-91444130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91437211..91438849-chr10:91444037..91445655,2	K562	blood:
2	chr10:91427349..91430030-chr10:91442278..91445461,3	K562	blood:
3	chr10:91441849..91444725-chr10:91459786..91462291,3	MCF-7	breast:
4	chr10:91427763..91430030-chr10:91442877..91445461,2	K562	blood:
5	chr10:91434484..91437093-chr10:91443083..91444662,2	K562	blood:
6	chr10:91443236..91445812-chr10:91446483..91448919,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PANK1-5	chr10:91444032-91444539	NONHSAT015527
2	lnc-PANK1-5	chr10:91441037-91444539	l_346_NR_026835

No data

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10159610	0.92[CEU][hapmap]
rs10430645	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs10430646	0.80[JPT][hapmap]
rs1048057	0.80[GIH][hapmap]
rs10509579	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs1062465	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs10785896	0.80[JPT][hapmap]
rs10881618	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs10881631	0.80[JPT][hapmap]
rs10881666	0.87[GIH][hapmap];0.89[JPT][hapmap]
rs11185841	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185861	0.80[JPT][hapmap]
rs11185880	0.81[JPT][hapmap]
rs11598411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250365	0.80[GIH][hapmap]
rs12414170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571525	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573024	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573060	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409358	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs1555868	0.80[JPT][hapmap]
rs1555881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886997	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs2026550	0.80[JPT][hapmap]
rs2038920	1.00[CEU][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2077946	0.87[GIH][hapmap]
rs2420640	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740037	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs3824609	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs56189305	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6586218	0.80[JPT][hapmap]
rs7076259	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs7076351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7081362	0.80[JPT][hapmap]
rs7085805	0.80[JPT][hapmap]
rs7087240	0.80[JPT][hapmap]
rs7089150	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7089473	0.80[JPT][hapmap]
rs7089645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092444	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs7095818	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs7096466	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs7097496	0.80[JPT][hapmap]
rs7098988	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100603	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs716781	0.80[JPT][hapmap]
rs745215	0.88[EUR][1000 genomes]
rs749607	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895379	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs7898670	0.80[JPT][hapmap]
rs7905382	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910615	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911443	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7912591	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181361	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs9325443	0.87[GIH][hapmap];0.80[JPT][hapmap]
rs943127	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs962524	0.87[GIH][hapmap];0.80[JPT][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4934493	KIF20B	cis	parietal	SCAN
rs4934493	KIF20B	cis	cerebellum	SCAN
rs4934493	FLJ37201	cis	parietal	SCAN
rs4934493	FGFBP3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91443600-91444600	Enhancers	HSMMtube	muscle
2	chr10:91443800-91444200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:91443800-91444600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:91443800-91444600	Enhancers	Pancreas	Pancrea
5	chr10:91443800-91444600	Enhancers	Right Atrium	heart
6	chr10:91443800-91445000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:91444000-91444400	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:91444000-91444600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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