Variant report

Variant	rs56189305
Chromosome Location	chr10:91459860-91459861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:91459365-91460030	HEK293-T-REx	kidney:	n/a	chr10:91459563-91459584
2	EP300	chr10:91459146-91459874	HepG2	liver:	n/a	n/a
3	POLR2A	chr10:91459653-91460065	HepG2	liver:	n/a	n/a
4	TBP	chr10:91459339-91460012	HepG2	liver:	n/a	n/a
5	MAX	chr10:91459310-91459995	NB4	blood:	n/a	n/a
6	MAX	chr10:91459213-91460116	HepG2	liver:	n/a	chr10:91460085-91460095
7	FOXA1	chr10:91459230-91459920	HepG2	liver:	n/a	n/a
8	HEY1	chr10:91459385-91460013	HepG2	liver:	n/a	n/a
9	RAD21	chr10:91459304-91460006	HepG2	liver:	n/a	n/a
10	ARID3A	chr10:91459307-91459965	HepG2	liver:	n/a	n/a
11	RCOR1	chr10:91459339-91459943	HepG2	liver:	n/a	n/a
12	MYBL2	chr10:91459193-91460081	HepG2	liver:	n/a	n/a
13	MYBL2	chr10:91459198-91459980	HepG2	liver:	n/a	n/a
14	POLR2A	chr10:91459218-91460308	HepG2	liver:	n/a	n/a
15	MBD4	chr10:91459258-91459898	HepG2	liver:	n/a	n/a
16	MAX	chr10:91459343-91460053	HepG2	liver:	n/a	n/a
17	MBD4	chr10:91459120-91460151	HepG2	liver:	n/a	n/a
18	HEY1	chr10:91459830-91460097	HepG2	liver:	n/a	n/a
19	TEAD4	chr10:91459123-91459942	HepG2	liver:	n/a	n/a
20	SMC3	chr10:91459336-91460054	HepG2	liver:	n/a	n/a
21	MXI1	chr10:91459332-91460138	HepG2	liver:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91401983..91406312-chr10:91459063..91463449,10	K562	blood:
2	chr10:91402369..91405488-chr10:91459565..91463449,8	K562	blood:
3	chr10:91402715..91410625-chr10:91458897..91464646,18	MCF-7	breast:
4	chr10:91403635..91406711-chr10:91457604..91462894,9	MCF-7	breast:
5	chr10:91459598..91461760-chr10:91483207..91485724,2	MCF-7	breast:
6	chr10:91456843..91459023-chr10:91459701..91462366,3	MCF-7	breast:
7	chr10:91392070..91394267-chr10:91459711..91461300,2	MCF-7	breast:
8	chr10:91410178..91412691-chr10:91459423..91462398,4	K562	blood:

No data

Variant related genes	Relation type
KIF20B	TF binding region
ENSG00000240996	TF binding region
ENSG00000235100	TF binding region
ENSG00000138182	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000225836	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000240996	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11185841	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1129777	0.98[ASN][1000 genomes]
rs11330	0.90[ASN][1000 genomes]
rs11598411	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11817267	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12414170	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12414650	0.80[AFR][1000 genomes]
rs12569886	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12570256	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12570750	0.93[ASN][1000 genomes]
rs12570813	0.86[ASN][1000 genomes]
rs12571268	0.98[ASN][1000 genomes]
rs12571525	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12571918	0.93[ASN][1000 genomes]
rs12572012	0.98[ASN][1000 genomes]
rs12572608	0.94[ASN][1000 genomes]
rs12572869	0.93[ASN][1000 genomes]
rs12572928	0.89[ASN][1000 genomes]
rs12573024	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12573060	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12763346	0.88[ASN][1000 genomes]
rs12764076	0.86[ASN][1000 genomes]
rs12766537	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12771413	0.89[ASN][1000 genomes]
rs12775091	0.93[ASN][1000 genomes]
rs12775783	0.94[ASN][1000 genomes]
rs12783582	0.98[ASN][1000 genomes]
rs12783845	0.98[ASN][1000 genomes]
rs1326260	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1409355	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1409357	0.93[ASN][1000 genomes]
rs1555881	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1555882	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1590566	0.93[ASN][1000 genomes]
rs17125834	0.93[ASN][1000 genomes]
rs17126269	0.98[ASN][1000 genomes]
rs17127001	0.93[ASN][1000 genomes]
rs1926139	0.93[ASN][1000 genomes]
rs1969902	0.93[ASN][1000 genomes]
rs2038920	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2094214	0.95[ASN][1000 genomes]
rs2418929	0.96[ASN][1000 genomes]
rs2420640	0.96[EUR][1000 genomes]
rs34379399	0.94[ASN][1000 genomes]
rs34408087	0.92[ASN][1000 genomes]
rs34486602	0.95[ASN][1000 genomes]
rs34591435	0.98[ASN][1000 genomes]
rs34663515	0.89[ASN][1000 genomes]
rs34692063	0.98[ASN][1000 genomes]
rs34784021	0.89[ASN][1000 genomes]
rs34928397	0.93[ASN][1000 genomes]
rs34993776	0.93[ASN][1000 genomes]
rs36019294	0.92[ASN][1000 genomes]
rs3740035	0.98[ASN][1000 genomes]
rs3758388	0.98[ASN][1000 genomes]
rs3824607	0.98[ASN][1000 genomes]
rs3925446	0.94[ASN][1000 genomes]
rs3962370	0.93[ASN][1000 genomes]
rs4934493	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4934494	0.96[ASN][1000 genomes]
rs55823491	0.93[ASN][1000 genomes]
rs58163515	0.88[ASN][1000 genomes]
rs6586213	0.94[ASN][1000 genomes]
rs67111731	0.93[ASN][1000 genomes]
rs67827533	0.96[ASN][1000 genomes]
rs7076351	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7081788	0.95[ASN][1000 genomes]
rs7089150	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7089645	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7098233	0.95[ASN][1000 genomes]
rs7098988	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72818784	0.89[ASN][1000 genomes]
rs745215	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs749607	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs768805	0.98[ASN][1000 genomes]
rs7905382	0.95[EUR][1000 genomes]
rs7910615	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7911443	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7912591	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs943127	0.96[EUR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91444600-91460800	Weak transcription	Left Ventricle	heart
2	chr10:91445200-91460600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:91453000-91460600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:91453800-91460800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:91455000-91460400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:91455400-91460600	Weak transcription	Psoas Muscle	Psoas
7	chr10:91456000-91460800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:91456200-91460200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:91456200-91460200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:91456200-91460200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:91456200-91460400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:91456200-91460800	Weak transcription	Ovary	ovary
13	chr10:91457000-91460600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:91457200-91460600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:91457200-91460800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:91457200-91460800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:91457400-91460800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:91459000-91460600	Enhancers	Liver	Liver
19	chr10:91459200-91460400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:91459400-91460000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:91459400-91460000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:91459400-91460000	Flanking Active TSS	HepG2	liver
23	chr10:91459400-91460200	Enhancers	NHEK	skin
24	chr10:91459400-91460400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:91459400-91460400	Enhancers	Osteobl	bone
26	chr10:91459400-91460600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:91459400-91463000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:91459600-91460200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr10:91459600-91460200	Enhancers	NHDF-Ad	bronchial
30	chr10:91459600-91460400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:91459600-91460400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:91459600-91460600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:91459600-91460600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:91459600-91460600	Weak transcription	Placenta	Placenta
35	chr10:91459600-91460600	Enhancers	Hela-S3	cervix
36	chr10:91459600-91462200	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr10:91459800-91460000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:91459800-91460000	Flanking Active TSS	Dnd41	blood
39	chr10:91459800-91460000	Enhancers	HMEC	breast
40	chr10:91459800-91460000	Flanking Active TSS	K562	blood
41	chr10:91459800-91460200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:91459800-91460200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:91459800-91460200	Flanking Active TSS	GM12878-XiMat	blood
44	chr10:91459800-91460400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr10:91459800-91460400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:91459800-91460600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:91459800-91460600	Enhancers	Fetal Heart	heart

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